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Started by upstream project "BIOFORMATS-test-repo" build number 261 originally caused by: Started by upstream project "Trigger" build number 285 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9827237883293331862.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41171_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:57:50,777 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:57:50,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:57:50,778 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:50,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:50,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:57:50,780 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:57:50,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:57:50,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:50,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:50,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:57:50,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:57:50,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:57:50,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:57:50,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:57:50,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:57:50,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:57:50,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:57:50,977 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:57:50,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:57:50,978 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:57:50,978 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:57:50,979 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:57:50,979 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-20 00:57:50,988] [main] java.version = 17.0.2 [testng] 00:57:50,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:57:50,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:51,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_00-57-51.log] [testng] 00:57:51,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-20 00:57:51,036] [main] testng.directory = /data [testng] [2024-11-20 00:57:51,036] [main] testng.configDirectory = /config [testng] [2024-11-20 00:57:51,045] [main] testng.multiplier = 1.0 [testng] [2024-11-20 00:57:51,046] [main] testng.in-memory = false [testng] [2024-11-20 00:57:51,046] [main] testng.allow-missing = false [testng] [2024-11-20 00:57:51,046] [main] user.language = en [testng] [2024-11-20 00:57:51,046] [main] user.country = ${user.country} [testng] [2024-11-20 00:57:51,046] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-20 00:57:51,511] [main] ---------------------------------------- [testng] [2024-11-20 00:57:51,512] [main] Total files: 25 [testng] [2024-11-20 00:57:51,512] [main] Scan time: 0.465 s (18 ms/file) [testng] [2024-11-20 00:57:51,512] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-20 00:58:01,435] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct: [testng] 00:58:01,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:58:01,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:01,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_00-58-01.log] [testng] 00:58:01,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa1408f - End of configuration. [testng] [2024-11-20 00:58:01,697] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] 00:58:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:58:01,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:01,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_00-58-01.log] [testng] 00:58:01,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443be920 - End of configuration. [testng] [2024-11-20 00:58:01,967] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:58:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:58:01,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:01,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_00-58-01.log] [testng] 00:58:01,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53857774 - End of configuration. [testng] [2024-11-20 00:58:02,229] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT: [testng] 00:58:02,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:58:02,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:02,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_00-58-02.log] [testng] 00:58:02,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dc69d2c - End of configuration. [testng] [2024-11-20 00:58:02,462] [pool-1-thread-9] Initializing /data/jqd/mireSixteen.pict: [testng] 00:58:02,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:58:02,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:02,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_00-58-02.log] [testng] 00:58:02,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b98fe25 - End of configuration. [testng] [2024-11-20 00:58:02,910] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:58:02,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:58:02,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:02,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_00-58-02.log] [testng] 00:58:02,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6637795b - End of configuration. [testng] [2024-11-20 00:58:03,511] [pool-1-thread-7] Initializing /data/misc/planet2.pict: [testng] 00:58:03,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:58:03,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:03,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_00-58-03.log] [testng] 00:58:03,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3910a62 - End of configuration. [testng] [2024-11-20 00:58:03,791] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] 00:58:03,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:58:03,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:03,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_00-58-03.log] [testng] 00:58:03,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b475107 - End of configuration. [testng] [2024-11-20 00:58:04,003] [pool-1-thread-5] Initializing /data/jqd/32bit.pict: [testng] 00:58:04,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:58:04,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:04,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_00-58-04.log] [testng] 00:58:04,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40418caf - End of configuration. [testng] [2024-11-20 00:58:04,454] [pool-1-thread-4] Initializing /data/misc/planet.png: [testng] 00:58:04,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:58:04,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:04,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_00-58-04.log] [testng] 00:58:04,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@471c79dd - End of configuration. [testng] [2024-11-20 00:58:04,515] [pool-1-thread-3] Initializing /data/jqd/mire32.pict: [testng] 00:58:04,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:58:04,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:04,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_00-58-04.log] [testng] 00:58:04,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@123aff00 - End of configuration. [testng] [2024-11-20 00:58:04,972] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 00:58:04,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:58:04,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:04,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_00-58-04.log] [testng] 00:58:04,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bae4230 - End of configuration. [testng] [2024-11-20 00:58:07,970] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-20 00:58:09,538] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-20 00:58:09,742] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-20 00:58:09,961] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-20 00:58:10,289] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-20 00:58:10,521] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-11-20 00:58:10,804] [pool-1-thread-11] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-20 00:58:11,020] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-11-20 00:58:11,508] [pool-1-thread-5] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-20 00:58:12,011] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-11-20 00:58:12,287] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] [2024-11-20 00:58:12,585] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-11-20 00:58:15,190] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS