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Started by upstream project "BIOFORMATS-test-repo" build number 261
originally caused by:
 Started by upstream project "Trigger" build number 285
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins12339812235866536590.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41263_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 04:40:27,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:40:27,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 04:40:27,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:40:27,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:40:27,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:40:27,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:40:27,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:40:27,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:40:27,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:40:27,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:40:27,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:40:27,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:40:27,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:40:27,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:40:27,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:40:27,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:40:27,806 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:40:27,806 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:40:27,806 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:40:27,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:40:27,807 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 04:40:27,808 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 04:40:27,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-20 04:40:27,818] [main] java.version = 17.0.2
   [testng] 04:40:27,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:40:27,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:40:27,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_04-40-27.log]
   [testng] 04:40:27,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-20 04:40:27,865] [main] testng.directory = /data
   [testng] [2024-11-20 04:40:27,865] [main] testng.configDirectory = /config
   [testng] [2024-11-20 04:40:27,873] [main] testng.multiplier = 1.0
   [testng] [2024-11-20 04:40:27,874] [main] testng.in-memory = false
   [testng] [2024-11-20 04:40:27,874] [main] testng.allow-missing = false
   [testng] [2024-11-20 04:40:27,875] [main] user.language = en
   [testng] [2024-11-20 04:40:27,875] [main] user.country = ${user.country}
   [testng] [2024-11-20 04:40:27,875] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-20 04:40:46,141] [main] ----------------------------------------
   [testng] [2024-11-20 04:40:46,142] [main] Total files: 944
   [testng] [2024-11-20 04:40:46,142] [main] Scan time: 18.266 s (19 ms/file)
   [testng] [2024-11-20 04:40:46,142] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-20 04:42:39,518] [pool-1-thread-1] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 04:42:39,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:42:39,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:39,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_04-42-39.log]
   [testng] 04:42:39,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e936d3 - End of configuration.
   [testng] [2024-11-20 04:42:41,056] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] 04:42:41,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:42:41,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:41,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_04-42-41.log]
   [testng] 04:42:41,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6216f21a - End of configuration.
   [testng] [2024-11-20 04:42:42,821] [pool-1-thread-11] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 04:42:42,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:42:42,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:42,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_04-42-42.log]
   [testng] 04:42:42,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb40c74 - End of configuration.
   [testng] [2024-11-20 04:42:44,352] [pool-1-thread-10] Initializing /data/brian/Series002_z01.tif: 
   [testng] 04:42:44,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:42:44,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:44,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_04-42-44.log]
   [testng] 04:42:44,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dacb6 - End of configuration.
   [testng] [2024-11-20 04:42:46,696] [pool-1-thread-9] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 04:42:46,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:42:46,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:46,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_04-42-46.log]
   [testng] 04:42:46,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d3ba08 - End of configuration.
   [testng] [2024-11-20 04:42:48,343] [pool-1-thread-8] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 04:42:48,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:42:48,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:48,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_04-42-48.log]
   [testng] 04:42:48,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c44bf6 - End of configuration.
   [testng] [2024-11-20 04:42:50,584] [pool-1-thread-7] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 04:42:50,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:42:50,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:50,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_04-42-50.log]
   [testng] 04:42:50,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@101f6833 - End of configuration.
   [testng] [2024-11-20 04:42:52,477] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 04:42:52,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:42:52,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:52,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_04-42-52.log]
   [testng] 04:42:52,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45157c8c - End of configuration.
   [testng] [2024-11-20 04:42:54,112] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 04:42:54,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:42:54,113 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:54,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_04-42-54.log]
   [testng] 04:42:54,114 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0f6c43 - End of configuration.
   [testng] [2024-11-20 04:42:56,116] [pool-1-thread-4] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] 04:42:56,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:42:56,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:56,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_04-42-56.log]
   [testng] 04:42:56,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2ffc16 - End of configuration.
   [testng] [2024-11-20 04:42:57,800] [pool-1-thread-3] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 04:42:57,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:42:57,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:57,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_04-42-57.log]
   [testng] 04:42:57,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75985c42 - End of configuration.
   [testng] [2024-11-20 04:42:59,610] [pool-1-thread-2] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 04:42:59,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:42:59,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:42:59,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_04-42-59.log]
   [testng] 04:42:59,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e474f58 - End of configuration.
   [testng] [2024-11-20 04:43:17,837] [pool-1-thread-4] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] [2024-11-20 04:44:26,822] [pool-1-thread-1] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] [2024-11-20 04:44:28,864] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif: 
   [testng] 06:42:55,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:42:55,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:42:55,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_06-42-55.log]
   [testng] 06:42:55,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35b17c06 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 122 minutes 32 seconds
Finished: SUCCESS