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Started by upstream project "BIOFORMATS-test-repo" build number 261
originally caused by:
 Started by upstream project "Trigger" build number 285
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13563065225407444163.sh
+ '[' cellr = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41270_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 05:18:34,946 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:18:34,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 05:18:34,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:18:34,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:18:34,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:18:34,949 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:18:34,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:18:34,949 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:18:34,950 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:18:34,950 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:18:34,950 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:18:34,951 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:18:35,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:18:35,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:18:35,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:18:35,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:18:35,125 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:18:35,125 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:18:35,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:18:35,126 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:18:35,126 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 05:18:35,127 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 05:18:35,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 177 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-20 05:18:35,135] [main] java.version = 17.0.2
   [testng] 05:18:35,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:18:35,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:18:35,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_05-18-35.log]
   [testng] 05:18:35,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-20 05:18:35,179] [main] testng.directory = /data
   [testng] [2024-11-20 05:18:35,179] [main] testng.configDirectory = /config
   [testng] [2024-11-20 05:18:35,188] [main] testng.multiplier = 1.0
   [testng] [2024-11-20 05:18:35,188] [main] testng.in-memory = false
   [testng] [2024-11-20 05:18:35,188] [main] testng.allow-missing = false
   [testng] [2024-11-20 05:18:35,189] [main] user.language = en
   [testng] [2024-11-20 05:18:35,189] [main] user.country = ${user.country}
   [testng] [2024-11-20 05:18:35,189] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-20 05:21:05,817] [main] ----------------------------------------
   [testng] [2024-11-20 05:21:05,817] [main] Total files: 256
   [testng] [2024-11-20 05:21:05,818] [main] Scan time: 150.628 s (588 ms/file)
   [testng] [2024-11-20 05:21:05,818] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 13 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-20 05:28:18,626] [pool-1-thread-1] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: 
   [testng] 05:28:18,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:28:18,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:18,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_05-28-18.log]
   [testng] 05:28:18,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c4ada3 - End of configuration.
   [testng] [2024-11-20 05:28:19,701] [pool-1-thread-12] Initializing /data/viktorie/2Channels.tif: 
   [testng] 05:28:19,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:28:19,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:19,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_05-28-19.log]
   [testng] 05:28:19,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@171fe10a - End of configuration.
   [testng] [2024-11-20 05:28:22,334] [pool-1-thread-11] Initializing /data/viktorie/test/test_d.mtb: 
   [testng] 05:28:22,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:28:22,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:22,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_05-28-22.log]
   [testng] 05:28:22,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f2e614 - End of configuration.
   [testng] [2024-11-20 05:28:23,385] [pool-1-thread-10] Initializing /data/qa-17107/plain/Plain_d.mtb: 
   [testng] 05:28:23,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:28:23,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:23,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_05-28-23.log]
   [testng] 05:28:23,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b15110b - End of configuration.
   [testng] [2024-11-20 05:28:24,744] [pool-1-thread-9] Initializing /data/colin/08-10-09/08-10-09_d.mtb: 
   [testng] 05:28:24,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:28:24,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:24,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_05-28-24.log]
   [testng] 05:28:24,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f0a1af9 - End of configuration.
   [testng] [2024-11-20 05:28:29,626] [pool-1-thread-8] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: 
   [testng] 05:28:29,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:28:29,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:29,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_05-28-29.log]
   [testng] 05:28:29,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719e3858 - End of configuration.
   [testng] [2024-11-20 05:28:31,230] [pool-1-thread-7] Initializing /data/qa-17107/example2/example2_d.mtb: 
   [testng] 05:28:31,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:28:31,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:31,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_05-28-31.log]
   [testng] 05:28:31,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f75ccd - End of configuration.
   [testng] [2024-11-20 05:28:32,499] [pool-1-thread-6] Initializing /data/clare/set_27_on_d.mtb: 
   [testng] 05:28:32,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:28:32,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:32,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_05-28-32.log]
   [testng] 05:28:32,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2516b030 - End of configuration.
   [testng] [2024-11-20 05:28:34,073] [pool-1-thread-5] Initializing /data/viktorie/Structure.jpg: 
   [testng] 05:28:34,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:28:34,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:34,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_05-28-34.log]
   [testng] 05:28:34,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64006215 - End of configuration.
   [testng] [2024-11-20 05:28:34,321] [pool-1-thread-4] Initializing /data/viktorie/090902/090902_d.mtb: 
   [testng] 05:28:34,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:28:34,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:34,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_05-28-34.log]
   [testng] 05:28:34,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cbe9e86 - End of configuration.
   [testng] [2024-11-20 05:28:35,491] [pool-1-thread-3] Initializing /data/kees/Mariaelena_d.mtb: 
   [testng] 05:28:35,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:28:35,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:35,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_05-28-35.log]
   [testng] 05:28:35,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b34d2fe - End of configuration.
   [testng] [2024-11-20 05:28:38,354] [pool-1-thread-2] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: 
   [testng] 05:28:38,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:28:38,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:28:38,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_05-28-38.log]
   [testng] 05:28:38,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11c8966d - End of configuration.
   [testng] [2024-11-20 05:28:48,203] [pool-1-thread-5] Initializing /data/colin/07-06-21/07-06-21_d.mtb: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 689, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 12 minutes 55 seconds
Finished: SUCCESS