Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 261
originally caused by:
 Started by upstream project "Trigger" build number 285
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2692347775918147147.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_41275_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 05:33:38,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:33:38,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 05:33:38,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:33:38,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:33:38,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:33:38,899 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:33:38,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:33:38,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:33:38,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:33:38,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:33:38,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:33:38,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:33:39,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:33:39,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:33:39,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:33:39,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:33:39,118 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:33:39,118 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:33:39,118 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:33:39,118 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:33:39,119 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 05:33:39,119 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 05:33:39,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-20 05:33:39,129] [main] java.version = 17.0.2
   [testng] 05:33:39,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:33:39,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:39,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-20_05-33-39.log]
   [testng] 05:33:39,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-20 05:33:39,182] [main] testng.directory = /data
   [testng] [2024-11-20 05:33:39,182] [main] testng.configDirectory = /config
   [testng] [2024-11-20 05:33:39,191] [main] testng.multiplier = 1.0
   [testng] [2024-11-20 05:33:39,192] [main] testng.in-memory = false
   [testng] [2024-11-20 05:33:39,192] [main] testng.allow-missing = false
   [testng] [2024-11-20 05:33:39,193] [main] user.language = en
   [testng] [2024-11-20 05:33:39,193] [main] user.country = ${user.country}
   [testng] [2024-11-20 05:33:39,193] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-20 05:33:43,604] [main] ----------------------------------------
   [testng] [2024-11-20 05:33:43,604] [main] Total files: 17
   [testng] [2024-11-20 05:33:43,604] [main] Scan time: 4.411 s (259 ms/file)
   [testng] [2024-11-20 05:33:43,604] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-20 05:33:49,285] [pool-1-thread-1] Initializing /data/samples/24bit 300x200x3.ipm: 
   [testng] 05:33:49,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:33:49,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:49,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-20_05-33-49.log]
   [testng] 05:33:49,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c932c75 - End of configuration.
   [testng] [2024-11-20 05:33:49,578] [pool-1-thread-12] Initializing /data/jcb/200810162/mutBA plus bio.ipm: 
   [testng] 05:33:49,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:33:49,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:49,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-20_05-33-49.log]
   [testng] 05:33:49,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41658eea - End of configuration.
   [testng] [2024-11-20 05:33:49,848] [pool-1-thread-11] Initializing /data/nigel/CD48_75_24hrColor.ipm: 
   [testng] 05:33:49,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:33:49,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:49,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-20_05-33-49.log]
   [testng] 05:33:49,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9ecae - End of configuration.
   [testng] [2024-11-20 05:33:50,128] [pool-1-thread-10] Initializing /data/jcb/200810162/wt BA plus bio.ipm: 
   [testng] 05:33:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:33:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:50,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-20_05-33-50.log]
   [testng] 05:33:50,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53625d47 - End of configuration.
   [testng] [2024-11-20 05:33:50,391] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: 
   [testng] 05:33:50,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:33:50,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:50,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-20_05-33-50.log]
   [testng] 05:33:50,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@97f86b9 - End of configuration.
   [testng] [2024-11-20 05:33:50,653] [pool-1-thread-8] Initializing /data/jcb/200810162/mut BA no bio.ipm: 
   [testng] 05:33:50,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:33:50,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:50,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-20_05-33-50.log]
   [testng] 05:33:50,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e539d36 - End of configuration.
   [testng] [2024-11-20 05:33:50,923] [pool-1-thread-7] Initializing /data/samples/08Bit 320x256xthree.ipm: 
   [testng] 05:33:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:33:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:50,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-20_05-33-50.log]
   [testng] 05:33:50,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e83150a - End of configuration.
   [testng] [2024-11-20 05:33:51,177] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm: 
   [testng] 05:33:51,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:33:51,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:51,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-20_05-33-51.log]
   [testng] 05:33:51,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4416e3 - End of configuration.
   [testng] [2024-11-20 05:33:51,429] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: 
   [testng] 05:33:51,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:33:51,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:51,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-20_05-33-51.log]
   [testng] 05:33:51,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d6d1795 - End of configuration.
   [testng] [2024-11-20 05:33:51,697] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: 
   [testng] 05:33:51,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:33:51,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:51,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-20_05-33-51.log]
   [testng] 05:33:51,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@787578dd - End of configuration.
   [testng] [2024-11-20 05:33:51,958] [pool-1-thread-3] Initializing /data/samples/48bit 150x100x3.ipm: 
   [testng] 05:33:51,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:33:51,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:51,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-20_05-33-51.log]
   [testng] 05:33:51,959 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1321c33 - End of configuration.
   [testng] [2024-11-20 05:33:52,255] [pool-1-thread-2] Initializing /data/samples/16-bit 320x256x3.ipm: 
   [testng] 05:33:52,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:33:52,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:33:52,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-20_05-33-52.log]
   [testng] 05:33:52,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c86090 - End of configuration.
   [testng] [2024-11-20 05:33:57,314] [pool-1-thread-1] Initializing /data/samples/08Bit 320x256x1.ipm: 
   [testng] [2024-11-20 05:33:57,609] [pool-1-thread-2] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: 
   [testng] [2024-11-20 05:33:57,952] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: 
   [testng] [2024-11-20 05:33:58,254] [pool-1-thread-11] Initializing /data/jcb/200810162/wt ba no bio.ipm: 
   [testng] [2024-11-20 05:33:58,597] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS