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Started by upstream project "BIOFORMATS-test-repo" build number 262 originally caused by: Started by upstream project "Trigger" build number 286 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18099356720583227020.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41369_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:58:30,882 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:58:30,883 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:58:30,883 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:30,884 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:30,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:58:30,885 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:58:30,885 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:58:30,885 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:30,886 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:30,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:58:30,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:58:30,887 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:58:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:58:31,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:58:31,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:58:31,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:58:31,095 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:58:31,095 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:58:31,096 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:58:31,096 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:58:31,096 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:58:31,097 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:58:31,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 01:58:31,107] [main] java.version = 21 [testng] 01:58:31,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:58:31,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:31,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_01-58-31.log] [testng] 01:58:31,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 01:58:31,159] [main] testng.directory = /data [testng] [2024-11-21 01:58:31,159] [main] testng.configDirectory = /config [testng] [2024-11-21 01:58:31,168] [main] testng.multiplier = 1.0 [testng] [2024-11-21 01:58:31,168] [main] testng.in-memory = false [testng] [2024-11-21 01:58:31,168] [main] testng.allow-missing = false [testng] [2024-11-21 01:58:31,169] [main] user.language = en [testng] [2024-11-21 01:58:31,169] [main] user.country = ${user.country} [testng] [2024-11-21 01:58:31,169] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 02:11:29,693] [main] ---------------------------------------- [testng] [2024-11-21 02:11:29,694] [main] Total files: 7329 [testng] [2024-11-21 02:11:29,694] [main] Scan time: 778.524 s (106 ms/file) [testng] [2024-11-21 02:11:29,882] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 02:27:00,307] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 02:27:00,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:27:00,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:00,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_02-27-00.log] [testng] 02:27:00,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cdcfe64 - End of configuration. [testng] [2024-11-21 02:27:21,302] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 02:27:21,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:27:21,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:21,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_02-27-21.log] [testng] 02:27:21,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ef04ed3 - End of configuration. [testng] [2024-11-21 02:27:23,246] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 02:27:23,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:27:23,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:23,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_02-27-23.log] [testng] 02:27:23,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f49105 - End of configuration. [testng] [2024-11-21 02:27:25,402] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] 02:27:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:27:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:25,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_02-27-25.log] [testng] 02:27:25,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@541b9c2b - End of configuration. [testng] [2024-11-21 02:27:27,384] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] 02:27:27,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:27:27,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:27,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_02-27-27.log] [testng] 02:27:27,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13dc5b3c - End of configuration. [testng] [2024-11-21 02:27:30,318] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 02:27:30,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:27:30,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:30,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_02-27-30.log] [testng] 02:27:30,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2319f25e - End of configuration. [testng] [2024-11-21 02:27:32,196] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] 02:27:32,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:27:32,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:32,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_02-27-32.log] [testng] 02:27:32,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770f3508 - End of configuration. [testng] [2024-11-21 02:27:33,848] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] 02:27:33,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:27:33,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:33,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_02-27-33.log] [testng] 02:27:33,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c96e173 - End of configuration. [testng] [2024-11-21 02:27:34,099] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] 02:27:34,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:27:34,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:34,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_02-27-34.log] [testng] 02:27:34,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572311e1 - End of configuration. [testng] [2024-11-21 02:27:36,072] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:27:36,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:27:36,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:36,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_02-27-36.log] [testng] 02:27:36,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6056efe6 - End of configuration. [testng] [2024-11-21 02:27:37,667] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 02:27:37,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:27:37,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:37,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_02-27-37.log] [testng] 02:27:37,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d1d1ee - End of configuration. [testng] [2024-11-21 02:27:39,673] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-21 02:27:39,675] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 02:27:39,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:27:39,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:39,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_02-27-39.log] [testng] 02:27:39,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@472df2ad - End of configuration. [testng] [2024-11-21 02:27:51,139] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-21 02:27:57,275] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-11-21 02:28:00,617] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-11-21 02:28:03,257] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-11-21 02:28:05,529] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-21 02:28:07,442] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-21 02:28:07,443] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-11-21 02:28:09,360] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-11-21 02:28:12,021] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-21 02:28:12,023] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-11-21 02:28:20,474] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-11-21 02:28:24,943] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-11-21 02:28:31,509] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-11-21 02:28:36,579] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-11-21 02:28:38,697] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-11-21 02:28:41,344] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-11-21 02:28:44,604] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-11-21 02:28:58,126] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-11-21 02:29:13,127] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-11-21 02:29:15,188] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-11-21 02:29:15,455] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-11-21 02:29:19,212] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-11-21 02:29:24,672] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-21 02:29:27,378] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-11-21 02:29:30,138] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-21 02:29:32,427] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-21 02:29:35,191] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-11-21 02:29:38,075] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-11-21 02:29:44,944] [pool-1-thread-8] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-11-21 02:29:47,526] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-11-21 02:29:52,526] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-11-21 02:29:55,683] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-21 02:29:56,894] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-11-21 02:30:03,751] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-21 02:30:06,454] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2024-11-21 02:30:14,735] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-11-21 02:30:16,842] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-11-21 02:30:20,124] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-21 02:30:20,126] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-11-21 02:30:22,582] [pool-1-thread-4] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-11-21 02:30:30,461] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:30:33,028] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-11-21 02:30:36,969] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-21 02:30:38,878] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-21 02:30:47,123] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-11-21 02:30:49,875] [pool-1-thread-3] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-11-21 02:30:51,918] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-11-21 02:31:00,839] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-11-21 02:31:03,149] [pool-1-thread-5] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-21 02:31:11,882] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-11-21 02:31:18,366] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-11-21 02:31:23,208] [pool-1-thread-8] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-11-21 02:31:36,625] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-11-21 02:31:39,032] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-11-21 02:31:49,465] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-11-21 02:32:21,938] [pool-1-thread-3] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-11-21 02:32:25,864] [pool-1-thread-11] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-11-21 02:32:37,018] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-11-21 02:32:40,152] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-21 02:32:41,779] [pool-1-thread-6] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-11-21 02:32:44,505] [pool-1-thread-5] Initializing /data/josh/2101to800.stk: [testng] [2024-11-21 02:32:56,476] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-11-21 02:33:00,111] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-11-21 02:33:03,296] [pool-1-thread-2] Used files list does not include base file [testng] [2024-11-21 02:33:03,343] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-11-21 02:33:08,878] [pool-1-thread-3] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-11-21 02:33:14,763] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-11-21 02:33:17,610] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-11-21 02:33:20,235] [pool-1-thread-12] Initializing 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Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-11-21 02:34:34,062] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-11-21 02:34:37,610] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-21 02:34:38,671] [pool-1-thread-5] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-11-21 02:34:45,713] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-11-21 02:34:50,970] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-11-21 02:34:54,629] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-21 02:34:59,681] [pool-1-thread-3] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-11-21 02:35:16,387] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-11-21 02:35:18,686] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-11-21 02:35:45,876] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-11-21 02:35:51,795] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:36:02,229] [pool-1-thread-2] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-11-21 02:36:04,878] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-11-21 02:36:10,565] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-21 02:36:13,691] [pool-1-thread-10] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-11-21 02:36:21,878] [pool-1-thread-2] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-11-21 02:36:31,112] [pool-1-thread-10] Initializing /data/dave/Z Series.stk: [testng] [2024-11-21 02:36:33,488] [pool-1-thread-8] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-11-21 02:36:41,707] [pool-1-thread-2] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-11-21 02:36:56,762] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-11-21 02:36:59,142] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-11-21 02:37:09,729] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-11-21 02:37:12,487] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-21 02:37:12,564] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-11-21 02:37:14,601] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-11-21 02:37:25,577] [pool-1-thread-12] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-11-21 02:37:31,400] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-11-21 02:37:33,674] [pool-1-thread-8] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-11-21 02:38:26,336] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-11-21 02:38:43,724] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-11-21 02:38:57,345] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-11-21 02:39:00,602] [pool-1-thread-7] Used files list does not include base file [testng] [2024-11-21 02:39:02,004] [pool-1-thread-10] Initializing /data/samples/zseries.stk: [testng] [2024-11-21 02:39:15,842] [pool-1-thread-10] Initializing /data/samples/10xcalib.tif: [testng] [2024-11-21 02:39:20,887] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-11-21 02:39:25,907] [pool-1-thread-12] Initializing 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02:40:24,329] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-11-21 02:40:26,825] [pool-1-thread-10] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-11-21 02:40:38,878] [pool-1-thread-2] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-11-21 02:40:41,076] [pool-1-thread-6] Initializing /data/steve/Experiment2.stk: [testng] [2024-11-21 02:40:49,742] [pool-1-thread-9] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-11-21 02:40:52,559] [pool-1-thread-7] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-11-21 02:40:55,535] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-11-21 02:40:58,549] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-11-21 02:41:06,055] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-11-21 02:41:09,127] [pool-1-thread-7] Initializing 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Combine-4.tif: [testng] [2024-11-21 02:42:05,689] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-21 02:42:13,815] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-11-21 02:42:26,342] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2024-11-21 02:42:31,612] [pool-1-thread-9] Initializing /data/samples/diatoms3d.stk: [testng] [2024-11-21 02:42:40,184] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-11-21 02:42:44,042] [pool-1-thread-9] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-11-21 02:42:51,977] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-21 02:42:53,935] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:42:57,160] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-11-21 02:43:02,116] [pool-1-thread-9] Initializing /data/samples/10xcalib.stk: [testng] [2024-11-21 02:43:09,131] [pool-1-thread-6] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-11-21 02:43:15,014] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-21 02:43:18,886] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-11-21 02:43:25,387] [pool-1-thread-7] Initializing /data/qa-16887/m-01.tif: [testng] [2024-11-21 02:43:29,383] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:43:32,448] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-21 02:43:34,302] [pool-1-thread-2] Used files list does not include base file [testng] [2024-11-21 02:43:41,801] [pool-1-thread-7] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-11-21 02:43:44,313] [pool-1-thread-8] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-11-21 02:43:52,904] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-11-21 02:44:15,911] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-11-21 02:44:18,067] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-11-21 02:44:20,183] [pool-1-thread-10] Initializing /data/qa-16915/m-04.tif: [testng] [2024-11-21 02:44:26,023] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-11-21 02:44:34,635] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-11-21 02:44:37,654] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-11-21 02:44:42,398] [pool-1-thread-7] Initializing /data/alex/Selected FITC.stk: [testng] [2024-11-21 02:44:46,605] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-11-21 02:44:52,565] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-11-21 02:44:57,626] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-11-21 02:45:02,166] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-11-21 02:45:10,525] [pool-1-thread-10] Initializing /data/steve/Experiment2.tif: [testng] [2024-11-21 02:45:12,819] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-21 02:45:24,672] [pool-1-thread-10] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-11-21 02:45:29,602] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-11-21 02:45:41,582] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-11-21 02:45:44,201] [pool-1-thread-2] Used files list does not include base file [testng] [2024-11-21 02:45:59,446] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-11-21 02:46:13,541] [pool-1-thread-7] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-11-21 02:46:24,327] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-11-21 02:46:31,340] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-11-21 02:46:46,501] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-11-21 02:47:03,719] [pool-1-thread-7] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-11-21 02:47:14,439] [pool-1-thread-7] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-11-21 02:47:24,017] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:47:25,815] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-11-21 02:47:28,125] [pool-1-thread-10] Used files list does not include base file [testng] [2024-11-21 02:47:41,317] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-11-21 02:47:42,920] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-11-21 02:47:52,609] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-11-21 02:47:55,140] [pool-1-thread-7] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-11-21 02:48:03,861] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-11-21 02:48:20,548] [pool-1-thread-7] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-11-21 02:48:26,670] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-21 02:48:31,895] [pool-1-thread-7] Initializing /data/cumol-test-series/23.001: [testng] [2024-11-21 02:48:34,640] [pool-1-thread-12] Initializing /data/josh/2101to600b.stk: [testng] [2024-11-21 02:48:53,072] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-11-21 02:48:55,579] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-21 02:48:59,339] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-21 02:49:24,561] [pool-1-thread-10] Initializing /data/samples/zser24.stk: [testng] [2024-11-21 02:49:35,610] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-11-21 02:49:52,931] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-21 02:50:21,803] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-21 02:50:24,651] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-21 02:50:27,573] [pool-1-thread-7] Initializing /data/grant/X.STK: [testng] [2024-11-21 02:50:40,962] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-11-21 02:50:46,325] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-11-21 02:50:48,682] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-11-21 02:50:52,999] [pool-1-thread-5] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-11-21 02:50:54,797] [pool-1-thread-12] Initializing /data/josh/2101to400astk.stk: [testng] [2024-11-21 02:51:11,647] [pool-1-thread-2] Initializing /data/josh/2101to600astk.stk: [testng] [2024-11-21 02:51:56,375] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-11-21 02:52:03,062] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-11-21 02:52:12,062] [pool-1-thread-7] Initializing /data/qa-30870/220209_posit5.tif: [testng] 06:11:13,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:11:13,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:13,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_06-11-13.log] [testng] 06:11:13,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e484b9 - End of configuration. [testng] 06:13:38,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:13:38,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:38,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_06-13-38.log] [testng] 06:13:38,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ce781c4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 255 minutes 10 seconds Finished: SUCCESS