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Started by upstream project "BIOFORMATS-test-repo" build number 262 originally caused by: Started by upstream project "Trigger" build number 286 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5678619373617903111.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41373_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:05:44,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:05:44,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 02:05:44,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:05:44,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:05:44,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:05:44,869 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:05:44,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:05:44,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:05:44,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:05:44,870 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:05:44,870 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:05:44,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:05:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:05:45,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:05:45,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:05:45,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:05:45,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:05:45,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:05:45,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:05:45,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:05:45,064 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 02:05:45,065 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 02:05:45,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 02:05:45,074] [main] java.version = 21 [testng] 02:05:45,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:05:45,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:05:45,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_02-05-45.log] [testng] 02:05:45,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 02:05:45,122] [main] testng.directory = /data [testng] [2024-11-21 02:05:45,122] [main] testng.configDirectory = /config [testng] [2024-11-21 02:05:45,131] [main] testng.multiplier = 1.0 [testng] [2024-11-21 02:05:45,131] [main] testng.in-memory = false [testng] [2024-11-21 02:05:45,131] [main] testng.allow-missing = false [testng] [2024-11-21 02:05:45,131] [main] user.language = en [testng] [2024-11-21 02:05:45,131] [main] user.country = ${user.country} [testng] [2024-11-21 02:05:45,131] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 02:09:04,061] [main] ---------------------------------------- [testng] [2024-11-21 02:09:04,061] [main] Total files: 268 [testng] [2024-11-21 02:09:04,062] [main] Scan time: 198.929 s (742 ms/file) [testng] [2024-11-21 02:09:04,062] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 02:13:35,633] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 02:13:35,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:13:35,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:35,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_02-13-35.log] [testng] 02:13:35,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c03ff0 - End of configuration. [testng] [2024-11-21 02:13:38,410] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:13:38,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:13:38,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:38,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_02-13-38.log] [testng] 02:13:38,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c4eb71a - End of configuration. [testng] [2024-11-21 02:13:39,119] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 02:13:39,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:13:39,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:39,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_02-13-39.log] [testng] 02:13:39,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7e63d9 - End of configuration. [testng] [2024-11-21 02:13:40,148] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] 02:13:40,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:13:40,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:40,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_02-13-40.log] [testng] 02:13:40,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a8b619 - End of configuration. [testng] [2024-11-21 02:13:40,790] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 02:13:40,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:13:40,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:40,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_02-13-40.log] [testng] 02:13:40,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aaa485f - End of configuration. [testng] [2024-11-21 02:13:41,501] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 02:13:41,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:13:41,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:41,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_02-13-41.log] [testng] 02:13:41,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49e1efa8 - End of configuration. [testng] [2024-11-21 02:13:42,130] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 02:13:42,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:13:42,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:42,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_02-13-42.log] [testng] 02:13:42,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f8efa5b - End of configuration. [testng] [2024-11-21 02:13:43,344] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] 02:13:43,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:13:43,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:43,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_02-13-43.log] [testng] 02:13:43,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d9d036b - End of configuration. [testng] [2024-11-21 02:13:44,013] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 02:13:44,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:13:44,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:44,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_02-13-44.log] [testng] 02:13:44,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e0b8c09 - End of configuration. [testng] [2024-11-21 02:13:44,680] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 02:13:44,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:13:44,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:44,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_02-13-44.log] [testng] 02:13:44,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@403871ce - End of configuration. [testng] [2024-11-21 02:13:45,589] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 02:13:45,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:13:45,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:45,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_02-13-45.log] [testng] 02:13:45,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d247c0 - End of configuration. [testng] [2024-11-21 02:13:46,173] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 02:13:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:13:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:13:46,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_02-13-46.log] [testng] 02:13:46,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7298e483 - End of configuration. [testng] [2024-11-21 02:13:54,698] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-21 02:13:57,314] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-21 02:13:57,910] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-11-21 02:13:58,605] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-21 02:13:59,335] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-21 02:13:59,775] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-21 02:14:02,633] [pool-1-thread-9] Initializing /data/steve/FITS/M13.fits: [testng] [2024-11-21 02:14:03,790] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-21 02:14:08,720] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-21 02:14:10,782] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-21 02:14:11,698] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-21 02:14:12,127] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-21 02:14:13,272] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-21 02:14:13,824] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-21 02:14:16,076] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-21 02:14:16,706] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-21 02:14:19,344] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-21 02:14:24,716] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-21 02:14:25,071] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-21 02:14:27,903] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-21 02:14:29,751] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-21 02:14:31,298] [pool-1-thread-5] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-21 02:14:31,574] [pool-1-thread-10] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-21 02:14:34,434] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-21 02:14:37,409] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-21 02:14:38,010] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-11-21 02:14:40,890] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-21 02:14:42,524] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-21 02:14:46,139] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-21 02:14:47,085] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-21 02:14:50,783] [pool-1-thread-2] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-11-21 02:14:53,692] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-21 02:14:54,745] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-21 02:14:57,516] [pool-1-thread-3] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-21 02:15:00,069] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-21 02:15:02,886] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-21 02:15:06,071] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-21 02:15:07,955] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-21 02:15:08,937] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-11-21 02:15:11,495] [pool-1-thread-10] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-21 02:15:14,153] [pool-1-thread-5] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-21 02:15:16,688] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-21 02:15:17,794] [pool-1-thread-3] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-21 02:15:19,592] [pool-1-thread-4] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-21 02:15:21,167] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-21 02:15:23,902] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-21 02:15:25,359] [pool-1-thread-9] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-21 02:15:28,172] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-21 02:15:29,803] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-21 02:15:32,463] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-21 02:15:33,744] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-21 02:15:35,399] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-21 02:15:36,132] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-11-21 02:15:38,586] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-21 02:15:39,898] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-11-21 02:15:41,602] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-21 02:15:42,575] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-11-21 02:15:45,092] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-21 02:15:45,508] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-21 02:15:45,899] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-21 02:15:46,413] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-21 02:15:47,013] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-21 02:15:49,394] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-21 02:15:51,678] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-21 02:15:52,310] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-11-21 02:15:53,386] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-11-21 02:15:54,150] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-21 02:15:57,057] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-21 02:15:58,000] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-21 02:16:00,700] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-21 02:16:01,259] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-21 02:16:01,874] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-21 02:16:04,301] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-21 02:16:07,048] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-21 02:16:07,997] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-21 02:16:09,019] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-21 02:16:10,025] [pool-1-thread-12] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-21 02:16:10,270] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-21 02:16:10,745] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-21 02:16:11,486] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-21 02:16:13,866] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-21 02:16:15,632] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-21 02:16:18,006] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-21 02:16:18,792] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-21 02:16:20,226] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-11-21 02:16:21,147] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-21 02:16:21,797] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-21 02:16:22,894] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-21 02:16:25,267] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-21 02:16:25,897] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-21 02:16:26,502] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-21 02:16:27,090] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-21 02:16:31,367] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-21 02:16:32,169] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-11-21 02:16:33,405] [pool-1-thread-7] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-21 02:16:36,104] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-21 02:16:36,490] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-21 02:16:37,117] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-21 02:16:38,387] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-21 02:16:41,116] [pool-1-thread-2] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-21 02:16:42,280] [pool-1-thread-11] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-21 02:16:44,541] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-21 02:16:49,297] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-21 02:16:50,017] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-21 02:16:51,343] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-21 02:16:53,540] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-21 02:16:55,920] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-21 02:16:58,968] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-21 02:16:59,676] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-21 02:17:01,540] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-21 02:17:04,279] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-21 02:17:06,097] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-21 02:17:09,008] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-21 02:17:12,130] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-21 02:17:14,705] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-21 02:17:15,760] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-21 02:17:16,828] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-21 02:17:18,070] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-11-21 02:17:20,459] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-21 02:17:23,637] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-21 02:17:25,844] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-21 02:17:26,975] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-21 02:17:28,752] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-21 02:17:29,252] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-21 02:17:30,384] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-21 02:17:31,082] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-21 02:17:33,860] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-21 02:17:34,709] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-21 02:17:37,457] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-21 02:17:38,524] [pool-1-thread-2] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-21 02:17:41,537] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-21 02:17:41,877] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-21 02:17:42,757] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-21 02:17:45,463] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-21 02:17:46,011] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-21 02:17:46,576] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-21 02:17:49,886] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-21 02:17:50,629] [pool-1-thread-6] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-21 02:17:51,931] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-21 02:17:54,376] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-21 02:17:56,575] [pool-1-thread-9] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-21 02:17:58,382] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-21 02:18:01,558] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-21 02:18:04,615] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-21 02:18:05,699] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-21 02:18:06,285] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-21 02:18:07,849] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-21 02:18:09,198] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 minutes 45 seconds Finished: SUCCESS