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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9799741925660697373.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41464_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:30:24,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:30:24,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 15:30:24,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:30:24,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:30:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:30:24,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:30:24,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:30:24,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:30:24,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:30:24,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:30:24,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:30:24,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:30:24,474 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:30:24,474 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:30:24,474 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 15:30:24,475 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 15:30:24,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 219 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 15:30:24,486] [main] java.version = 21 [testng] 15:30:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:30:24,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:30:24,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_15-30-24.log] [testng] 15:30:24,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 15:30:24,558] [main] testng.directory = /data [testng] [2024-11-21 15:30:24,558] [main] testng.configDirectory = /config [testng] [2024-11-21 15:30:24,567] [main] testng.multiplier = 1.0 [testng] [2024-11-21 15:30:24,567] [main] testng.in-memory = false [testng] [2024-11-21 15:30:24,567] [main] testng.allow-missing = false [testng] [2024-11-21 15:30:24,567] [main] user.language = en [testng] [2024-11-21 15:30:24,567] [main] user.country = ${user.country} [testng] [2024-11-21 15:30:24,568] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 15:30:42,654] [main] ---------------------------------------- [testng] [2024-11-21 15:30:42,654] [main] Total files: 21 [testng] [2024-11-21 15:30:42,654] [main] Scan time: 18.086 s (861 ms/file) [testng] [2024-11-21 15:30:42,654] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 15:31:10,674] [pool-1-thread-1] Initializing /data/stefan/001_q09.txt: [testng] 15:31:10,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:31:10,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:10,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_15-31-10.log] [testng] 15:31:10,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1442e585 - End of configuration. [testng] [2024-11-21 15:31:12,180] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 15:31:12,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:31:12,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:12,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_15-31-12.log] [testng] 15:31:12,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65d78d88 - End of configuration. [testng] [2024-11-21 15:31:13,043] [pool-1-thread-11] Initializing /data/stefan/001_q12.txt: [testng] 15:31:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:31:13,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:13,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_15-31-13.log] [testng] 15:31:13,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d85e6ba - End of configuration. [testng] [2024-11-21 15:31:15,685] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 15:31:15,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:31:15,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:15,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_15-31-15.log] [testng] 15:31:15,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1321b722 - End of configuration. [testng] [2024-11-21 15:31:18,379] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt: [testng] 15:31:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:31:18,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:18,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_15-31-18.log] [testng] 15:31:18,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2088d177 - End of configuration. [testng] [2024-11-21 15:31:21,264] [pool-1-thread-8] Initializing /data/stefan/001_q06.txt: [testng] 15:31:21,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:31:21,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:21,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_15-31-21.log] [testng] 15:31:21,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55b5c72e - End of configuration. [testng] [2024-11-21 15:31:22,189] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt: [testng] 15:31:22,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:31:22,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:22,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_15-31-22.log] [testng] 15:31:22,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f66e9aa - End of configuration. [testng] [2024-11-21 15:31:23,637] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt: [testng] 15:31:23,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:31:23,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:23,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_15-31-23.log] [testng] 15:31:23,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b7b13db - End of configuration. [testng] [2024-11-21 15:31:24,794] [pool-1-thread-5] Initializing /data/stefan/001_q05.txt: [testng] 15:31:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:31:24,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:24,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_15-31-24.log] [testng] 15:31:24,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506768fc - End of configuration. [testng] [2024-11-21 15:31:26,582] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 15:31:26,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:31:26,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:26,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_15-31-26.log] [testng] 15:31:26,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@487c8651 - End of configuration. [testng] [2024-11-21 15:31:28,281] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt: [testng] 15:31:28,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:31:28,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:28,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_15-31-28.log] [testng] 15:31:28,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22188293 - End of configuration. [testng] [2024-11-21 15:31:29,443] [pool-1-thread-2] Initializing /data/stefan/001_q08.txt: [testng] 15:31:29,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:31:29,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:31:29,443 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_15-31-29.log] [testng] 15:31:29,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8ac6e1 - End of configuration. [testng] [2024-11-21 15:31:50,883] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] [2024-11-21 15:31:52,336] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt: [testng] [2024-11-21 15:31:54,190] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt: [testng] [2024-11-21 15:31:55,723] [pool-1-thread-8] Initializing /data/stefan/001_q10.txt: [testng] [2024-11-21 15:31:59,805] [pool-1-thread-7] Initializing /data/stefan/001_q15.txt: [testng] [2024-11-21 15:32:02,051] [pool-1-thread-5] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 11 seconds Finished: SUCCESS