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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16996522129688426821.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41486_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:47:00,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:47:00,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 15:47:00,350 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:47:00,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:47:00,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:47:00,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:47:00,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:47:00,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:47:00,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:47:00,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:47:00,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:47:00,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:47:00,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:47:00,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:47:00,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:47:00,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:47:00,544 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:47:00,545 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:47:00,545 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:47:00,545 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:47:00,545 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 15:47:00,546 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 15:47:00,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 15:47:00,555] [main] java.version = 21 [testng] 15:47:00,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:47:00,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:00,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_15-47-00.log] [testng] 15:47:00,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 15:47:00,603] [main] testng.directory = /data [testng] [2024-11-21 15:47:00,603] [main] testng.configDirectory = /config [testng] [2024-11-21 15:47:00,611] [main] testng.multiplier = 1.0 [testng] [2024-11-21 15:47:00,612] [main] testng.in-memory = false [testng] [2024-11-21 15:47:00,612] [main] testng.allow-missing = false [testng] [2024-11-21 15:47:00,612] [main] user.language = en [testng] [2024-11-21 15:47:00,612] [main] user.country = ${user.country} [testng] [2024-11-21 15:47:00,612] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 15:47:01,064] [main] ---------------------------------------- [testng] [2024-11-21 15:47:01,064] [main] Total files: 21 [testng] [2024-11-21 15:47:01,065] [main] Scan time: 0.452 s (21 ms/file) [testng] [2024-11-21 15:47:01,065] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 15:47:07,626] [pool-1-thread-1] Initializing /data/samples/UBW8.TGA: [testng] 15:47:07,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:47:07,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:07,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_15-47-07.log] [testng] 15:47:07,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a11b202 - End of configuration. [testng] [2024-11-21 15:47:07,974] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA: [testng] 15:47:07,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:47:07,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:07,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_15-47-07.log] [testng] 15:47:07,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378b64e6 - End of configuration. [testng] [2024-11-21 15:47:08,375] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA: [testng] 15:47:08,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:47:08,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:08,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_15-47-08.log] [testng] 15:47:08,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729cf4f9 - End of configuration. [testng] [2024-11-21 15:47:08,739] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 15:47:08,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:47:08,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:08,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_15-47-08.log] [testng] 15:47:08,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60770a2e - End of configuration. [testng] [2024-11-21 15:47:09,081] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 15:47:09,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:47:09,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:09,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_15-47-09.log] [testng] 15:47:09,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1627a0fd - End of configuration. [testng] [2024-11-21 15:47:09,417] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA: [testng] 15:47:09,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:47:09,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:09,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_15-47-09.log] [testng] 15:47:09,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef91a63 - End of configuration. [testng] [2024-11-21 15:47:09,770] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 15:47:09,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:47:09,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:09,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_15-47-09.log] [testng] 15:47:09,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e9e0358 - End of configuration. [testng] [2024-11-21 15:47:10,131] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA: [testng] 15:47:10,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:47:10,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:10,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_15-47-10.log] [testng] 15:47:10,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ad8a6e - End of configuration. [testng] [2024-11-21 15:47:10,512] [pool-1-thread-5] Initializing /data/samples/CTC24.TGA: [testng] 15:47:10,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:47:10,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:10,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_15-47-10.log] [testng] 15:47:10,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d1aeb10 - End of configuration. [testng] [2024-11-21 15:47:10,874] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA: [testng] 15:47:10,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:47:10,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:10,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_15-47-10.log] [testng] 15:47:10,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76c9c908 - End of configuration. [testng] [2024-11-21 15:47:11,181] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] 15:47:11,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:47:11,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:11,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_15-47-11.log] [testng] 15:47:11,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@668bb69b - End of configuration. [testng] [2024-11-21 15:47:11,568] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA: [testng] 15:47:11,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:47:11,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:47:11,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_15-47-11.log] [testng] 15:47:11,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a645f2b - End of configuration. [testng] [2024-11-21 15:47:18,187] [pool-1-thread-9] Initializing /data/samples/UTC16.TGA: [testng] [2024-11-21 15:47:18,600] [pool-1-thread-10] Initializing /data/samples/XING_T24.TGA: [testng] [2024-11-21 15:47:19,038] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] [2024-11-21 15:47:19,444] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-21 15:47:19,808] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] [2024-11-21 15:47:20,137] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] [2024-11-21 15:47:20,503] [pool-1-thread-7] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-21 15:47:20,873] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-11-21 15:47:21,405] [pool-1-thread-2] Initializing /data/samples/UCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS