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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins661573050151298477.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41490_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:50:13,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:50:13,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 15:50:13,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:50:13,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:50:13,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:50:13,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:50:13,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:50:13,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:50:13,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:50:13,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:50:13,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:50:13,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:50:13,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:50:13,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:50:13,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:50:13,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:50:13,221 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:50:13,222 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:50:13,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:50:13,222 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:50:13,222 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 15:50:13,223 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 15:50:13,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 15:50:13,233] [main] java.version = 21 [testng] 15:50:13,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:50:13,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:50:13,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_15-50-13.log] [testng] 15:50:13,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 15:50:13,282] [main] testng.directory = /data [testng] [2024-11-21 15:50:13,282] [main] testng.configDirectory = /config [testng] [2024-11-21 15:50:13,291] [main] testng.multiplier = 1.0 [testng] [2024-11-21 15:50:13,292] [main] testng.in-memory = false [testng] [2024-11-21 15:50:13,292] [main] testng.allow-missing = false [testng] [2024-11-21 15:50:13,292] [main] user.language = en [testng] [2024-11-21 15:50:13,292] [main] user.country = ${user.country} [testng] [2024-11-21 15:50:13,292] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 15:50:34,561] [main] ---------------------------------------- [testng] [2024-11-21 15:50:34,562] [main] Total files: 259 [testng] [2024-11-21 15:50:34,562] [main] Scan time: 21.269 s (82 ms/file) [testng] [2024-11-21 15:50:34,562] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 16:02:37,534] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 16:02:37,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 16:02:37,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:02:37,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_16-02-37.log] [testng] 16:02:37,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a04de5e - End of configuration. [testng] [2024-11-21 16:02:58,188] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 16:02:58,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:02:58,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:02:58,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_16-02-58.log] [testng] 16:02:58,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fd64862 - End of configuration. [testng] [2024-11-21 16:02:59,018] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 16:02:59,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 16:02:59,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:02:59,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_16-02-59.log] [testng] 16:02:59,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bfbb9e1 - End of configuration. [testng] [2024-11-21 16:02:59,120] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 16:02:59,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 16:02:59,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:02:59,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_16-02-59.log] [testng] 16:02:59,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@372b27c3 - End of configuration. [testng] [2024-11-21 16:03:00,041] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 16:03:00,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 16:03:00,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:00,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_16-03-00.log] [testng] 16:03:00,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c530fd - End of configuration. [testng] [2024-11-21 16:03:00,534] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 16:03:00,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 16:03:00,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:00,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_16-03-00.log] [testng] 16:03:00,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d654a70 - End of configuration. [testng] [2024-11-21 16:03:04,024] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 16:03:04,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 16:03:04,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:04,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_16-03-04.log] [testng] 16:03:04,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d727ce8 - End of configuration. [testng] [2024-11-21 16:03:04,978] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 16:03:04,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 16:03:04,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:04,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_16-03-04.log] [testng] 16:03:04,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e741ca5 - End of configuration. [testng] [2024-11-21 16:03:05,949] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 16:03:05,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 16:03:05,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:05,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_16-03-05.log] [testng] 16:03:05,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7b5593 - End of configuration. [testng] [2024-11-21 16:03:07,340] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 16:03:07,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 16:03:07,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:03:07,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_16-03-07.log] [testng] 16:03:07,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c28bd54 - End of configuration. [testng] [2024-11-21 16:04:02,492] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 16:04:02,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 16:04:02,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:04:02,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_16-04-02.log] [testng] 16:04:02,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2084c319 - End of configuration. [testng] [2024-11-21 16:04:03,046] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 16:04:03,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 16:04:03,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:04:03,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_16-04-03.log] [testng] 16:04:03,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262f9fe8 - End of configuration. [testng] [2024-11-21 16:04:10,253] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-21 16:04:16,817] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-21 16:04:18,639] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-11-21 16:04:19,694] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-21 16:04:20,410] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-21 16:04:20,546] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-21 16:04:23,580] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-21 16:04:25,840] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-21 16:04:26,621] [pool-1-thread-12] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-21 16:04:29,496] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-21 16:04:31,112] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] [2024-11-21 16:04:32,326] [pool-1-thread-10] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-21 16:04:33,806] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-11-21 16:04:34,585] [pool-1-thread-8] Initializing /data/glen/Image0002.oif: [testng] [2024-11-21 16:04:40,224] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-21 16:04:41,500] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-21 16:04:44,418] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-21 16:04:47,497] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-21 16:04:49,744] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-21 16:04:51,456] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2024-11-21 16:04:51,630] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-21 16:04:53,022] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-21 16:04:54,984] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-21 16:04:56,200] [pool-1-thread-3] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-21 16:04:57,373] [pool-1-thread-9] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-21 16:04:59,171] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-21 16:05:02,814] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-21 16:05:03,997] [pool-1-thread-11] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-21 16:05:05,140] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-21 16:05:06,488] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] [2024-11-21 16:05:07,077] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-21 16:05:10,818] [pool-1-thread-7] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-21 16:05:12,592] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-21 16:05:15,010] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] [2024-11-21 16:05:15,665] [pool-1-thread-9] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-21 16:05:16,096] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-21 16:05:18,688] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-21 16:05:20,571] [pool-1-thread-7] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-21 16:05:32,120] [pool-1-thread-11] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-21 16:05:32,997] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-21 16:05:35,624] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-21 16:05:38,411] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-21 16:05:40,622] [pool-1-thread-11] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-21 16:05:42,214] [pool-1-thread-3] Initializing /data/marc/V0606L.oib: [testng] [2024-11-21 16:05:46,044] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-21 16:05:48,139] [pool-1-thread-11] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-21 16:05:48,691] [pool-1-thread-10] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-21 16:05:58,274] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-21 16:05:58,371] [pool-1-thread-10] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-21 16:06:01,800] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-21 16:06:03,588] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-21 16:06:04,461] [pool-1-thread-3] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-21 16:06:15,465] [pool-1-thread-11] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-21 16:06:28,704] [pool-1-thread-10] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-21 16:06:29,602] [pool-1-thread-9] Initializing /data/david/Image0016.oif: [testng] [2024-11-21 16:06:30,852] [pool-1-thread-5] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-21 16:06:38,211] [pool-1-thread-12] Initializing /data/marc/V0606J.oib: [testng] [2024-11-21 16:06:41,072] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-21 16:07:09,381] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-21 16:07:22,396] [pool-1-thread-12] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-21 16:08:17,961] [pool-1-thread-6] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-21 16:08:31,672] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-21 16:08:38,221] [pool-1-thread-6] Initializing /data/sten/01.oib: [testng] [2024-11-21 16:08:44,517] [pool-1-thread-6] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-21 16:08:45,569] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-21 16:08:51,107] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-21 16:08:53,729] [pool-1-thread-6] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-21 16:09:00,125] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-21 16:16:01,440] [pool-1-thread-5] Initializing /data/jae/Image0001.oib: [testng] [2024-11-21 16:16:11,498] [pool-1-thread-5] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-21 16:16:22,634] [pool-1-thread-5] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-21 16:22:08,220] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-21 16:22:21,367] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-21 16:22:30,743] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-21 16:22:40,727] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-21 16:22:49,247] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-21 16:23:49,732] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-21 16:23:50,819] [pool-1-thread-9] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-21 16:23:57,924] [pool-1-thread-9] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-21 16:23:58,969] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-21 16:24:08,931] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] [2024-11-21 16:24:10,234] [pool-1-thread-9] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-21 16:24:20,375] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-11-21 16:24:47,414] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-21 16:28:29,123] [pool-1-thread-8] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-21 16:28:43,377] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-21 16:28:55,610] [pool-1-thread-8] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-21 16:34:37,773] [pool-1-thread-8] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-21 16:35:58,800] [pool-1-thread-7] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-21 16:36:30,919] [pool-1-thread-10] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-21 16:37:01,774] [pool-1-thread-7] Initializing /data/glen/simulstack.oib: [testng] [2024-11-21 16:37:10,186] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-21 16:37:19,811] [pool-1-thread-7] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-21 16:37:27,657] [pool-1-thread-7] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-21 16:37:38,307] [pool-1-thread-7] Initializing /data/allan/62909#1.oib: [testng] [2024-11-21 16:37:45,317] [pool-1-thread-7] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-21 16:37:55,445] [pool-1-thread-10] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-21 16:40:25,790] [pool-1-thread-8] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-21 16:41:35,997] [pool-1-thread-11] Initializing /data/brian/FLIP.oib: [testng] [2024-11-21 16:41:47,809] [pool-1-thread-11] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-21 16:43:45,763] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-21 16:50:46,587] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-21 16:50:57,460] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-21 16:51:05,628] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-21 16:51:17,327] [pool-1-thread-3] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-21 16:51:23,117] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-21 16:51:27,228] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-21 16:51:30,174] [pool-1-thread-9] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-21 16:51:40,548] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-21 16:51:49,611] [pool-1-thread-9] Initializing /data/karl/Image0009.oib: [testng] [2024-11-21 16:51:58,042] [pool-1-thread-9] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-21 16:53:03,094] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-21 16:53:13,372] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-21 16:53:25,125] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-21 16:56:34,370] [pool-1-thread-11] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-21 16:56:42,444] [pool-1-thread-11] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-21 16:56:46,007] [pool-1-thread-3] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-21 16:56:50,455] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-21 16:57:00,202] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-21 16:57:08,025] [pool-1-thread-3] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-21 16:59:00,627] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-21 16:59:02,706] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-21 17:01:29,956] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-11-21 17:02:28,881] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-21 17:02:35,422] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-21 17:02:40,830] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-21 17:03:28,456] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-21 17:03:38,780] [pool-1-thread-5] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-21 17:03:45,340] [pool-1-thread-5] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-21 17:03:52,736] [pool-1-thread-5] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-21 17:03:57,733] [pool-1-thread-5] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-21 17:04:41,963] [pool-1-thread-5] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 17:40:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 17:40:40,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:40:40,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_17-40-40.log] [testng] 17:40:40,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@461cacd4 - End of configuration. [testng] 18:14:33,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 18:14:33,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:14:33,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_18-14-33.log] [testng] 18:14:33,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36260a27 - End of configuration. [testng] 18:37:01,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 18:37:01,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:37:01,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_18-37-01.log] [testng] 18:37:01,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c1e96d - End of configuration. [testng] 18:47:13,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 18:47:13,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:47:13,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_18-47-13.log] [testng] 18:47:13,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 177 minutes 5 seconds Finished: SUCCESS