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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16291942304929693937.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41499_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 15:58:06,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 15:58:06,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 15:58:06,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:58:06,898 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:58:06,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:58:06,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:58:06,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:58:06,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:58:06,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:58:06,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:58:06,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:58:06,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:58:07,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:58:07,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:58:07,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:58:07,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:58:07,093 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:58:07,093 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:58:07,093 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:58:07,094 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:58:07,094 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 15:58:07,095 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 15:58:07,095 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 15:58:07,104] [main] java.version = 21 [testng] 15:58:07,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:58:07,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:07,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_15-58-07.log] [testng] 15:58:07,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 15:58:07,152] [main] testng.directory = /data [testng] [2024-11-21 15:58:07,152] [main] testng.configDirectory = /config [testng] [2024-11-21 15:58:07,161] [main] testng.multiplier = 1.0 [testng] [2024-11-21 15:58:07,161] [main] testng.in-memory = false [testng] [2024-11-21 15:58:07,161] [main] testng.allow-missing = false [testng] [2024-11-21 15:58:07,162] [main] user.language = en [testng] [2024-11-21 15:58:07,162] [main] user.country = ${user.country} [testng] [2024-11-21 15:58:07,162] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 15:58:07,788] [main] ---------------------------------------- [testng] [2024-11-21 15:58:07,788] [main] Total files: 25 [testng] [2024-11-21 15:58:07,788] [main] Scan time: 0.625 s (25 ms/file) [testng] [2024-11-21 15:58:07,788] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 15:58:17,737] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] 15:58:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:58:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:17,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_15-58-17.log] [testng] 15:58:17,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2128bff1 - End of configuration. [testng] [2024-11-21 15:58:18,203] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] 15:58:18,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:58:18,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:18,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_15-58-18.log] [testng] 15:58:18,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27c0fc43 - End of configuration. [testng] [2024-11-21 15:58:18,653] [pool-1-thread-11] Initializing /data/jqd/mireSixteen.pict: [testng] 15:58:18,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:58:18,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:18,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_15-58-18.log] [testng] 15:58:18,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7418af50 - End of configuration. [testng] [2024-11-21 15:58:19,021] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 15:58:19,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:58:19,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:19,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_15-58-19.log] [testng] 15:58:19,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b7c2f - End of configuration. [testng] [2024-11-21 15:58:19,277] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] 15:58:19,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:58:19,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:19,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_15-58-19.log] [testng] 15:58:19,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115d85fe - End of configuration. [testng] [2024-11-21 15:58:19,525] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 15:58:19,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:58:19,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:19,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_15-58-19.log] [testng] 15:58:19,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0c73f5 - End of configuration. [testng] [2024-11-21 15:58:19,747] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] 15:58:19,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:58:19,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:19,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_15-58-19.log] [testng] 15:58:19,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a83fbe7 - End of configuration. [testng] [2024-11-21 15:58:20,010] [pool-1-thread-6] Initializing /data/misc/planet.png: [testng] 15:58:20,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:58:20,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:20,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_15-58-20.log] [testng] 15:58:20,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b0710a - End of configuration. [testng] [2024-11-21 15:58:20,048] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 15:58:20,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:58:20,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:20,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_15-58-20.log] [testng] 15:58:20,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c544086 - End of configuration. [testng] [2024-11-21 15:58:20,480] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] 15:58:20,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:58:20,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:20,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_15-58-20.log] [testng] 15:58:20,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16df42d7 - End of configuration. [testng] [2024-11-21 15:58:20,689] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 15:58:20,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:58:20,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:20,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_15-58-20.log] [testng] 15:58:20,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c544f1d - End of configuration. [testng] [2024-11-21 15:58:20,992] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 15:58:20,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:58:20,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:58:20,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_15-58-20.log] [testng] 15:58:20,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c504651 - End of configuration. [testng] [2024-11-21 15:58:23,812] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-21 15:58:25,082] [pool-1-thread-10] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-11-21 15:58:25,313] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-21 15:58:25,517] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] [2024-11-21 15:58:25,832] [pool-1-thread-3] Initializing /data/jqd/mire32.pict: [testng] [2024-11-21 15:58:26,025] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2024-11-21 15:58:26,264] [pool-1-thread-4] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-21 15:58:26,464] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-21 15:58:26,661] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-11-21 15:58:26,850] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] [2024-11-21 15:58:27,459] [pool-1-thread-5] Initializing /data/brian/images/VENUS.pct: [testng] [2024-11-21 15:58:27,870] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-11-21 15:58:29,838] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS