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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5834427318627975789.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4153_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:42:30,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:42:30,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:42:30,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:42:30,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:42:30,171 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:42:30,171 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:42:30,171 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:42:30,172 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:42:30,172 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 07:42:30,173 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 07:42:30,173 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 488 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:42:30,184] [main] java.version = 1.8.0_342 [testng] 07:42:30,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:42:30,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:30,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-42-30.log] [testng] 07:42:30,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:42:30,257] [main] testng.directory = /data [testng] [2024-04-12 07:42:30,257] [main] testng.configDirectory = /config [testng] [2024-04-12 07:42:30,280] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:42:30,280] [main] testng.in-memory = false [testng] [2024-04-12 07:42:30,280] [main] testng.allow-missing = false [testng] [2024-04-12 07:42:30,280] [main] user.language = en [testng] [2024-04-12 07:42:30,280] [main] user.country = ${user.country} [testng] [2024-04-12 07:42:30,281] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:42:31,271] [main] ---------------------------------------- [testng] [2024-04-12 07:42:31,271] [main] Total files: 16 [testng] [2024-04-12 07:42:31,271] [main] Scan time: 0.99 s (61 ms/file) [testng] [2024-04-12 07:42:31,272] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:42:41,206] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 07:42:41,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:42:41,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-42-41.log] [testng] 07:42:41,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@86751a8 - End of configuration. [testng] [2024-04-12 07:42:41,291] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 07:42:41,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:42:41,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-42-41.log] [testng] 07:42:41,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb9fa63 - End of configuration. [testng] [2024-04-12 07:42:41,489] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 07:42:41,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:42:41,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-42-41.log] [testng] 07:42:41,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@139342ea - End of configuration. [testng] [2024-04-12 07:42:41,567] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 07:42:41,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:42:41,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-42-41.log] [testng] 07:42:41,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c9cec67 - End of configuration. [testng] [2024-04-12 07:42:41,685] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 07:42:41,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:42:41,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-42-41.log] [testng] 07:42:41,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4dea39 - End of configuration. [testng] [2024-04-12 07:42:41,842] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 07:42:41,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:42:41,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-42-41.log] [testng] 07:42:41,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4761d6e8 - End of configuration. [testng] [2024-04-12 07:42:41,965] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 07:42:41,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:42:41,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:41,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-42-41.log] [testng] 07:42:41,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a550ea - End of configuration. [testng] [2024-04-12 07:42:42,185] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 07:42:42,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:42:42,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:42,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-42-42.log] [testng] 07:42:42,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1c9a9f - End of configuration. [testng] [2024-04-12 07:42:42,256] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 07:42:42,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:42:42,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:42,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-42-42.log] [testng] 07:42:42,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eeeb843 - End of configuration. [testng] [2024-04-12 07:42:42,395] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 07:42:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:42:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:42,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-42-42.log] [testng] 07:42:42,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5808f0ce - End of configuration. [testng] [2024-04-12 07:42:42,518] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 07:42:42,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:42:42,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:42,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-42-42.log] [testng] 07:42:42,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@859a191 - End of configuration. [testng] [2024-04-12 07:42:42,591] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 07:42:42,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:42:42,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:42,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-42-42.log] [testng] 07:42:42,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b90401b - End of configuration. [testng] [2024-04-12 07:43:34,082] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-04-12 07:43:35,512] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] [2024-04-12 07:43:37,963] [pool-1-thread-3] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 9 seconds Finished: SUCCESS