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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14506349371089554035.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4157_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:47:47,698 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:47:47,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:47:47,700 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:47:47,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:47:47,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:47:47,702 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:47:47,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:47:47,702 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:47:47,703 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:47:47,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:47:47,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:47:47,703 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:47:47,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:47:47,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:47:48,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:47:48,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:47:48,030 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:47:48,031 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:47:48,031 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:47:48,031 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:47:48,031 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:47:48,032 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:47:48,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 330 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:47:48,047] [main] java.version = 1.8.0_342 [testng] 07:47:48,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:47:48,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:47:48,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-47-48.log] [testng] 07:47:48,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:47:48,108] [main] testng.directory = /data [testng] [2024-04-12 07:47:48,108] [main] testng.configDirectory = /config [testng] [2024-04-12 07:47:48,122] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:47:48,122] [main] testng.in-memory = false [testng] [2024-04-12 07:47:48,122] [main] testng.allow-missing = false [testng] [2024-04-12 07:47:48,122] [main] user.language = en [testng] [2024-04-12 07:47:48,122] [main] user.country = ${user.country} [testng] [2024-04-12 07:47:48,123] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:54:12,717] [main] ---------------------------------------- [testng] [2024-04-12 07:54:12,717] [main] Total files: 7329 [testng] [2024-04-12 07:54:12,718] [main] Scan time: 384.594 s (52 ms/file) [testng] [2024-04-12 07:54:12,718] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:57:28,129] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 07:57:28,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:57:28,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-57-28.log] [testng] 07:57:28,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d60b000 - End of configuration. [testng] [2024-04-12 07:57:28,202] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 07:57:28,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:57:28,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-57-28.log] [testng] 07:57:28,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@381b3859 - End of configuration. [testng] [2024-04-12 07:57:28,237] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 07:57:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:57:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-57-28.log] [testng] 07:57:28,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef14c77 - End of configuration. [testng] [2024-04-12 07:57:28,294] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 07:57:28,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:57:28,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-57-28.log] [testng] 07:57:28,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bea6d06 - End of configuration. [testng] [2024-04-12 07:57:28,401] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 07:57:28,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:57:28,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-57-28.log] [testng] 07:57:28,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ace5718 - End of configuration. [testng] [2024-04-12 07:57:28,578] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 07:57:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:57:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-57-28.log] [testng] 07:57:28,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68271dc3 - End of configuration. [testng] [2024-04-12 07:57:28,614] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 07:57:28,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:57:28,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-57-28.log] [testng] 07:57:28,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4979b285 - End of configuration. [testng] [2024-04-12 07:57:28,726] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 07:57:28,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:57:28,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-57-28.log] [testng] 07:57:28,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f099175 - End of configuration. [testng] [2024-04-12 07:57:28,813] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 07:57:28,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:57:28,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-57-28.log] [testng] 07:57:28,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2ae3e0 - End of configuration. [testng] [2024-04-12 07:57:28,863] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 07:57:28,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:57:28,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-57-28.log] [testng] 07:57:28,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73950934 - End of configuration. [testng] [2024-04-12 07:57:28,956] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 07:57:28,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:57:28,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:28,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-57-28.log] [testng] 07:57:28,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22e55a81 - End of configuration. [testng] [2024-04-12 07:57:29,091] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 07:57:29,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:57:29,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:57:29,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-57-29.log] [testng] 07:57:29,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed7e95b - End of configuration. [testng] [2024-04-12 07:57:31,718] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-12 07:57:32,497] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-12 07:57:32,554] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-12 07:57:33,682] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-12 07:57:34,236] [pool-1-thread-1] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-12 07:57:34,846] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-12 07:57:34,953] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-12 07:57:35,049] [pool-1-thread-7] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-12 07:57:35,143] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-12 07:57:35,246] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-12 07:57:35,711] [pool-1-thread-8] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-12 07:57:35,931] [pool-1-thread-7] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-12 07:57:36,567] [pool-1-thread-2] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-12 07:57:36,681] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-12 07:57:36,742] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-12 07:57:36,751] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-12 07:57:36,795] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-12 07:57:37,131] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-12 07:57:39,012] [pool-1-thread-10] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-12 07:57:39,374] [pool-1-thread-3] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-12 07:57:39,600] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-12 07:57:39,763] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-12 07:57:39,813] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-12 07:57:40,355] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-12 07:57:40,468] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-12 07:57:40,484] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-12 07:57:40,486] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-12 07:57:40,504] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-12 07:57:40,543] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-12 07:57:40,857] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-12 07:57:40,904] [pool-1-thread-3] Used files list does not include base file [testng] [2024-04-12 07:57:40,913] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-12 07:57:41,426] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-04-12 07:57:41,604] [pool-1-thread-5] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-12 07:57:41,660] [pool-1-thread-11] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-12 07:57:41,714] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-12 07:57:42,173] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-12 07:57:42,287] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-12 07:57:42,450] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-12 07:57:42,465] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-12 07:57:42,601] [pool-1-thread-5] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-12 07:57:51,457] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-04-12 07:57:52,082] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-12 07:57:52,494] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-12 07:57:52,669] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-04-12 07:57:52,786] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-12 07:57:52,829] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-12 07:57:53,348] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-12 07:57:53,427] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-12 07:57:54,054] [pool-1-thread-11] Initializing /data/david/tl4.tif: [testng] [2024-04-12 07:57:54,443] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:57:54,562] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-12 07:57:56,036] [pool-1-thread-12] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-12 07:57:56,241] [pool-1-thread-1] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-12 07:57:56,387] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-12 07:57:59,145] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:57:59,276] [pool-1-thread-2] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-12 07:57:59,363] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:57:59,430] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:00,103] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-12 07:58:00,155] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-12 07:58:00,517] [pool-1-thread-3] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-12 07:58:01,457] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-12 07:58:01,735] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-12 07:58:02,326] [pool-1-thread-6] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-12 07:58:02,436] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-12 07:58:02,764] [pool-1-thread-1] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-12 07:58:03,453] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-12 07:58:03,512] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-12 07:58:03,705] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:04,439] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-12 07:58:04,780] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-12 07:58:05,707] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-12 07:58:05,812] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-12 07:58:05,823] [pool-1-thread-6] Initializing 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[2024-04-12 07:58:14,870] [pool-1-thread-12] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-12 07:58:14,957] [pool-1-thread-1] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-12 07:58:16,670] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-12 07:58:16,737] [pool-1-thread-10] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-12 07:58:16,798] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-12 07:58:16,882] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-12 07:58:17,417] [pool-1-thread-10] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-12 07:58:18,507] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-12 07:58:18,575] [pool-1-thread-4] Initializing 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[testng] [2024-04-12 07:58:23,830] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-04-12 07:58:24,089] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-12 07:58:24,830] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-12 07:58:25,544] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-12 07:58:26,261] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-12 07:58:26,399] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-12 07:58:26,682] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-12 07:58:27,337] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-12 07:58:27,468] [pool-1-thread-11] Initializing 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/data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-12 07:58:42,281] [pool-1-thread-5] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-12 07:58:42,325] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-12 07:58:42,406] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-12 07:58:42,610] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-12 07:58:42,816] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-12 07:58:45,037] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-12 07:58:45,335] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-12 07:58:45,416] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-12 07:58:46,275] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-12 07:58:46,737] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:47,146] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-12 07:58:47,725] [pool-1-thread-5] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-12 07:58:47,806] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-12 07:58:47,928] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-04-12 07:58:48,590] [pool-1-thread-10] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-12 07:58:49,209] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-12 07:58:49,276] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-12 07:58:50,084] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:50,142] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-12 07:58:50,202] [pool-1-thread-10] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-12 07:58:50,236] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-12 07:58:50,274] [pool-1-thread-11] Used files list does not include base file [testng] [2024-04-12 07:58:50,316] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:51,091] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-12 07:58:51,196] [pool-1-thread-5] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-12 07:58:52,124] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-12 07:58:52,827] [pool-1-thread-2] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-12 07:58:53,151] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-12 07:58:53,248] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-12 07:58:53,262] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-12 07:58:53,393] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-12 07:58:53,831] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-12 07:58:53,953] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-12 07:58:54,404] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-12 07:58:54,538] [pool-1-thread-6] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-12 07:58:54,804] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-12 07:58:54,910] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-12 07:58:56,078] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-12 07:58:56,259] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:58:56,591] [pool-1-thread-12] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-12 07:58:57,425] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-12 07:58:57,613] [pool-1-thread-6] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-04-12 07:58:58,716] [pool-1-thread-11] Initializing 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/data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-12 07:59:00,713] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-12 07:59:00,988] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-12 07:59:01,735] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-12 07:59:01,786] [pool-1-thread-9] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-12 07:59:17,273] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-12 07:59:17,325] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-12 07:59:17,327] [pool-1-thread-4] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-12 07:59:17,689] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-12 07:59:17,771] [pool-1-thread-8] Initializing /data/grant/X.STK: [testng] [2024-04-12 07:59:17,930] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-12 07:59:18,079] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-12 07:59:19,545] [pool-1-thread-4] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-12 07:59:22,430] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-12 07:59:23,054] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-12 07:59:23,366] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-12 07:59:24,059] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-12 07:59:24,590] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-12 07:59:24,850] [pool-1-thread-11] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-12 07:59:24,926] [pool-1-thread-12] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-12 07:59:25,374] [pool-1-thread-8] Initializing /data/thomas/test.tif: [testng] [2024-04-12 07:59:25,740] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-12 07:59:25,999] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-12 07:59:26,092] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-12 07:59:26,286] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-12 07:59:26,368] [pool-1-thread-12] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-12 07:59:26,671] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-04-12 07:59:27,501] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 39 seconds Finished: SUCCESS