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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14098851490781090992.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41581_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 19:37:11,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 19:37:11,780 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 19:37:11,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 19:37:11,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 19:37:11,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 19:37:11,782 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 19:37:11,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 19:37:11,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 19:37:11,783 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 19:37:11,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 19:37:11,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 19:37:11,784 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 19:37:11,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 19:37:11,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 19:37:11,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 19:37:11,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 19:37:11,975 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 19:37:11,975 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 19:37:11,975 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 19:37:11,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 19:37:11,976 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 19:37:11,977 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 19:37:11,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 19:37:11,986] [main] java.version = 21 [testng] 19:37:11,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 19:37:11,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:12,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_19-37-12.log] [testng] 19:37:12,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 19:37:12,034] [main] testng.directory = /data [testng] [2024-11-21 19:37:12,034] [main] testng.configDirectory = /config [testng] [2024-11-21 19:37:12,043] [main] testng.multiplier = 1.0 [testng] [2024-11-21 19:37:12,043] [main] testng.in-memory = false [testng] [2024-11-21 19:37:12,044] [main] testng.allow-missing = false [testng] [2024-11-21 19:37:12,044] [main] user.language = en [testng] [2024-11-21 19:37:12,044] [main] user.country = ${user.country} [testng] [2024-11-21 19:37:12,044] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 19:37:12,757] [main] ---------------------------------------- [testng] [2024-11-21 19:37:12,757] [main] Total files: 18 [testng] [2024-11-21 19:37:12,757] [main] Scan time: 0.713 s (39 ms/file) [testng] [2024-11-21 19:37:12,758] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 19:37:27,404] [pool-1-thread-1] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 19:37:27,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 19:37:27,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:27,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_19-37-27.log] [testng] 19:37:27,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410c5250 - End of configuration. [testng] [2024-11-21 19:37:28,722] [pool-1-thread-12] Initializing /data/misc/smilie.psd: [testng] 19:37:28,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 19:37:28,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:28,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-21_19-37-28.log] [testng] 19:37:28,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f0b9c53 - End of configuration. [testng] [2024-11-21 19:37:29,412] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd: [testng] 19:37:29,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 19:37:29,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:29,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_19-37-29.log] [testng] 19:37:29,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e239ce7 - End of configuration. [testng] [2024-11-21 19:37:30,161] [pool-1-thread-10] Initializing /data/ascb/607x.psd: [testng] 19:37:30,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 19:37:30,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:30,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_19-37-30.log] [testng] 19:37:30,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e02db44 - End of configuration. [testng] [2024-11-21 19:37:31,182] [pool-1-thread-9] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 19:37:31,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 19:37:31,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:31,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_19-37-31.log] [testng] 19:37:31,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c652f64 - End of configuration. [testng] [2024-11-21 19:37:32,021] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 19:37:32,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 19:37:32,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:32,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_19-37-32.log] [testng] 19:37:32,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd7dd74 - End of configuration. [testng] [2024-11-21 19:37:32,852] [pool-1-thread-7] Initializing /data/big-images/8kx8k.psd: [testng] 19:37:32,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 19:37:32,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:32,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_19-37-32.log] [testng] 19:37:32,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba7d139 - End of configuration. [testng] [2024-11-21 19:37:33,488] [pool-1-thread-6] Initializing /data/misc/glossy_orbs.psd: [testng] 19:37:33,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 19:37:33,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:33,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_19-37-33.log] [testng] 19:37:33,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f1590e - End of configuration. [testng] [2024-11-21 19:37:34,213] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd: [testng] 19:37:34,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 19:37:34,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:34,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_19-37-34.log] [testng] 19:37:34,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9653c1 - End of configuration. [testng] [2024-11-21 19:37:35,025] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] 19:37:35,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 19:37:35,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:35,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_19-37-35.log] [testng] 19:37:35,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca2f6e - End of configuration. [testng] [2024-11-21 19:37:37,954] [pool-1-thread-3] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 19:37:37,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 19:37:37,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:37,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_19-37-37.log] [testng] 19:37:37,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration. [testng] [2024-11-21 19:37:38,871] [pool-1-thread-2] Initializing /data/misc/glossy_buttons.psd: [testng] 19:37:38,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 19:37:38,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:38,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_19-37-38.log] [testng] 19:37:38,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6370a348 - End of configuration. [testng] [2024-11-21 19:37:49,543] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-11-21 19:37:50,400] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-11-21 19:37:51,170] [pool-1-thread-3] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-11-21 19:37:51,959] [pool-1-thread-1] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2024-11-21 19:37:52,797] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-11-21 19:37:53,595] [pool-1-thread-8] Initializing /data/ascb/423.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 seconds Finished: SUCCESS