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Started by upstream project "BIOFORMATS-test-repo" build number 263 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1792365946488756415.sh + '[' obf = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41600_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 20:43:09,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 20:43:09,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 20:43:09,651 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:43:09,652 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 20:43:09,653 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 20:43:09,653 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 20:43:09,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 20:43:09,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:43:09,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 20:43:09,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 20:43:09,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 20:43:09,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 20:43:09,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 20:43:09,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 20:43:09,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 20:43:09,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 20:43:09,865 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 20:43:09,866 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 20:43:09,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 20:43:09,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 20:43:09,866 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 20:43:09,867 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 20:43:09,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-21 20:43:09,876] [main] java.version = 21 [testng] 20:43:09,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 20:43:09,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:43:09,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-21_20-43-09.log] [testng] 20:43:09,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-21 20:43:09,924] [main] testng.directory = /data [testng] [2024-11-21 20:43:09,924] [main] testng.configDirectory = /config [testng] [2024-11-21 20:43:09,933] [main] testng.multiplier = 1.0 [testng] [2024-11-21 20:43:09,934] [main] testng.in-memory = false [testng] [2024-11-21 20:43:09,934] [main] testng.allow-missing = false [testng] [2024-11-21 20:43:09,934] [main] user.language = en [testng] [2024-11-21 20:43:09,934] [main] user.country = ${user.country} [testng] [2024-11-21 20:43:09,934] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-21 20:43:36,033] [main] ---------------------------------------- [testng] [2024-11-21 20:43:36,033] [main] Total files: 12 [testng] [2024-11-21 20:43:36,033] [main] Scan time: 26.099 s (2174 ms/file) [testng] [2024-11-21 20:43:36,034] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-21 20:44:06,851] [pool-1-thread-1] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: [testng] 20:44:06,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 20:44:06,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:06,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-21_20-44-06.log] [testng] 20:44:06,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@718c05de - End of configuration. [testng] [2024-11-21 20:44:09,127] [pool-1-thread-11] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: [testng] 20:44:09,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 20:44:09,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:09,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-21_20-44-09.log] [testng] 20:44:09,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67fc169c - End of configuration. [testng] [2024-11-21 20:44:11,961] [pool-1-thread-10] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: [testng] 20:44:11,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 20:44:11,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:11,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-21_20-44-11.log] [testng] 20:44:11,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a067cc3 - End of configuration. [testng] [2024-11-21 20:44:14,142] [pool-1-thread-9] Initializing /data/qa-17111/before 1.msr: [testng] 20:44:14,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 20:44:14,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:14,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-21_20-44-14.log] [testng] 20:44:14,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f6325d - End of configuration. [testng] [2024-11-21 20:44:17,117] [pool-1-thread-8] Initializing /data/bjoernthiel/20191106__zstack.msr: [testng] 20:44:17,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 20:44:17,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:17,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-21_20-44-17.log] [testng] 20:44:17,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2cd835 - End of configuration. [testng] [2024-11-21 20:44:19,260] [pool-1-thread-7] Initializing /data/qa-16895/Measurement1.msr: [testng] 20:44:19,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 20:44:19,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:19,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-21_20-44-19.log] [testng] 20:44:19,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ecfb31 - End of configuration. [testng] [2024-11-21 20:44:21,215] [pool-1-thread-6] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: [testng] 20:44:21,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 20:44:21,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:21,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-21_20-44-21.log] [testng] 20:44:21,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ed48ef - End of configuration. [testng] [2024-11-21 20:44:23,168] [pool-1-thread-5] Initializing /data/qa-27923/test.obf: [testng] 20:44:23,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 20:44:23,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:23,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-21_20-44-23.log] [testng] 20:44:23,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@759d77a5 - End of configuration. [testng] [2024-11-21 20:44:25,148] [pool-1-thread-4] Initializing /data/public/ngladitz/v4/test-v4.obf: [testng] 20:44:25,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 20:44:25,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:25,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-21_20-44-25.log] [testng] 20:44:25,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b32ab7f - End of configuration. [testng] [2024-11-21 20:44:27,255] [pool-1-thread-3] Initializing /data/public/ngladitz/v6/test-v6.obf: [testng] 20:44:27,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 20:44:27,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:27,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-21_20-44-27.log] [testng] 20:44:27,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f65e4f6 - End of configuration. [testng] [2024-11-21 20:44:29,780] [pool-1-thread-2] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: [testng] 20:44:29,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 20:44:29,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 20:44:29,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-21_20-44-29.log] [testng] 20:44:29,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60086230 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 59 seconds Finished: SUCCESS