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Started by upstream project "BIOFORMATS-test-repo" build number 264 originally caused by: Started by upstream project "Trigger" build number 287 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11449819596861835707.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41663_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:57:14,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:57:14,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:57:14,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:14,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:14,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:57:14,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:57:14,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:57:14,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:14,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:14,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:57:14,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:57:14,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:57:14,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:57:14,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:57:14,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:57:14,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:57:14,992 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:57:14,992 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:57:14,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:57:14,992 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:57:14,993 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:57:14,993 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:57:14,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-22 00:57:15,003] [main] java.version = 1.8.0_342 [testng] 00:57:15,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:57:15,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:15,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-22_00-57-15.log] [testng] 00:57:15,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-22 00:57:15,055] [main] testng.directory = /data [testng] [2024-11-22 00:57:15,055] [main] testng.configDirectory = /config [testng] [2024-11-22 00:57:15,067] [main] testng.multiplier = 1.0 [testng] [2024-11-22 00:57:15,067] [main] testng.in-memory = false [testng] [2024-11-22 00:57:15,067] [main] testng.allow-missing = false [testng] [2024-11-22 00:57:15,067] [main] user.language = en [testng] [2024-11-22 00:57:15,067] [main] user.country = ${user.country} [testng] [2024-11-22 00:57:15,067] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-22 00:57:15,727] [main] ---------------------------------------- [testng] [2024-11-22 00:57:15,728] [main] Total files: 25 [testng] [2024-11-22 00:57:15,728] [main] Scan time: 0.659 s (26 ms/file) [testng] [2024-11-22 00:57:15,728] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-22 00:57:20,468] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:57:20,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:57:20,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:20,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-22_00-57-20.log] [testng] 00:57:20,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6935bfd0 - End of configuration. [testng] [2024-11-22 00:57:20,633] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 00:57:20,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:57:20,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:20,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-22_00-57-20.log] [testng] 00:57:20,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@464719d - End of configuration. [testng] [2024-11-22 00:57:20,768] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:57:20,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:57:20,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:20,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-22_00-57-20.log] [testng] 00:57:20,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@613b46cd - End of configuration. [testng] [2024-11-22 00:57:20,897] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 00:57:20,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:57:20,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:20,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-22_00-57-20.log] [testng] 00:57:20,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26450633 - End of configuration. [testng] [2024-11-22 00:57:21,034] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:57:21,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:57:21,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-22_00-57-21.log] [testng] 00:57:21,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e26aae4 - End of configuration. [testng] [2024-11-22 00:57:21,173] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 00:57:21,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:57:21,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-22_00-57-21.log] [testng] 00:57:21,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd297f9 - End of configuration. [testng] [2024-11-22 00:57:21,190] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:57:21,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:57:21,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-22_00-57-21.log] [testng] 00:57:21,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284bdb91 - End of configuration. [testng] [2024-11-22 00:57:21,344] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 00:57:21,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:57:21,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-22_00-57-21.log] [testng] 00:57:21,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5f59bb - End of configuration. [testng] [2024-11-22 00:57:21,497] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:57:21,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:57:21,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-22_00-57-21.log] [testng] 00:57:21,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c8119f - End of configuration. [testng] [2024-11-22 00:57:21,647] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 00:57:21,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:57:21,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-22_00-57-21.log] [testng] 00:57:21,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@184bf2e3 - End of configuration. [testng] [2024-11-22 00:57:21,800] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:57:21,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:57:21,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-22_00-57-21.log] [testng] 00:57:21,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121419fd - End of configuration. [testng] [2024-11-22 00:57:21,968] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:57:21,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:57:21,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:21,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-22_00-57-21.log] [testng] 00:57:21,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c830b1 - End of configuration. [testng] [2024-11-22 00:57:24,910] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-22 00:57:26,903] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-22 00:57:27,287] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-22 00:57:27,531] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-22 00:57:27,840] [pool-1-thread-5] Initializing /data/brian/images/YEL.PCT: [testng] [2024-11-22 00:57:28,016] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [2024-11-22 00:57:28,384] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-11-22 00:57:28,805] [pool-1-thread-7] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-22 00:57:29,087] [pool-1-thread-9] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-22 00:57:29,420] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-22 00:57:29,723] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-22 00:57:30,075] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-11-22 00:57:32,095] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 seconds Finished: SUCCESS