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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins4098656558419609363.sh + '[' fluoview = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4171_merge_ci -v /uod/idr/repos/curated/fluoview:/data -v /uod/idr-scratch/merge-ci/curated/fluoview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:06:45,103 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:06:45,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:06:45,106 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:06:45,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:06:45,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:06:45,108 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:06:45,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:06:45,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:06:45,109 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:06:45,109 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:06:45,109 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:06:45,109 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:06:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:06:45,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:06:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:06:45,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:06:45,454 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:06:45,454 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:06:45,454 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:06:45,455 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:06:45,456 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:06:45,457 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:06:45,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 348 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 08:06:45,470] [main] java.version = 1.8.0_342 [testng] 08:06:45,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:06:45,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:45,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-06-45.log] [testng] 08:06:45,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 08:06:45,556] [main] testng.directory = /data [testng] [2024-04-12 08:06:45,557] [main] testng.configDirectory = /config [testng] [2024-04-12 08:06:45,589] [main] testng.multiplier = 1.0 [testng] [2024-04-12 08:06:45,590] [main] testng.in-memory = false [testng] [2024-04-12 08:06:45,590] [main] testng.allow-missing = false [testng] [2024-04-12 08:06:45,590] [main] user.language = en [testng] [2024-04-12 08:06:45,590] [main] user.country = ${user.country} [testng] [2024-04-12 08:06:45,590] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 08:06:46,870] [main] ---------------------------------------- [testng] [2024-04-12 08:06:46,870] [main] Total files: 14 [testng] [2024-04-12 08:06:46,870] [main] Scan time: 1.279 s (91 ms/file) [testng] [2024-04-12 08:06:46,870] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 08:06:52,926] [pool-1-thread-1] Initializing /data/jae/BrdU.1c-1.z.Live1-25-2005_11-58-40_AM.tif: [testng] 08:06:52,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:06:52,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:52,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_08-06-52.log] [testng] 08:06:52,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359318a2 - End of configuration. [testng] [2024-04-12 08:06:52,998] [pool-1-thread-12] Initializing /data/timg/eric-three.tif: [testng] 08:06:52,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:06:52,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:52,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_08-06-52.log] [testng] 08:06:53,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c1a514 - End of configuration. [testng] [2024-04-12 08:06:53,109] [pool-1-thread-11] Initializing /data/aaron/olympus_fv500.tif: [testng] 08:06:53,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:06:53,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_08-06-53.log] [testng] 08:06:53,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bf06de - End of configuration. [testng] [2024-04-12 08:06:53,239] [pool-1-thread-10] Initializing /data/timg/eric-three-projection.tif: [testng] 08:06:53,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:06:53,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_08-06-53.log] [testng] 08:06:53,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2abde1 - End of configuration. [testng] [2024-04-12 08:06:53,278] [pool-1-thread-9] Initializing /data/timg/eric-one.tif: [testng] 08:06:53,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:06:53,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_08-06-53.log] [testng] 08:06:53,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15bab779 - End of configuration. [testng] [2024-04-12 08:06:53,405] [pool-1-thread-8] Initializing /data/timg/LiveOne.tif: [testng] 08:06:53,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:06:53,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_08-06-53.log] [testng] 08:06:53,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae3ba3d - End of configuration. [testng] [2024-04-12 08:06:53,443] [pool-1-thread-7] Initializing /data/brian/DBTRG 2X 1a-1_DSP.TIF: [testng] 08:06:53,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:06:53,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_08-06-53.log] [testng] 08:06:53,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d232a05 - End of configuration. [testng] [2024-04-12 08:06:53,511] [pool-1-thread-6] Initializing /data/timg/LiveTwo.tif: [testng] 08:06:53,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:06:53,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_08-06-53.log] [testng] 08:06:53,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8810eb - End of configuration. [testng] [2024-04-12 08:06:53,579] [pool-1-thread-5] Initializing /data/shalin/40xNA0.6-512x512.tif: [testng] 08:06:53,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:06:53,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_08-06-53.log] [testng] 08:06:53,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d1470c - End of configuration. [testng] [2024-04-12 08:06:53,676] [pool-1-thread-4] Initializing /data/timg/LiveThree-xyzt.tif: [testng] 08:06:53,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:06:53,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_08-06-53.log] [testng] 08:06:53,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@526aeb4e - End of configuration. [testng] [2024-04-12 08:06:53,750] [pool-1-thread-3] Initializing /data/brian/DBTRG 2X 1a-1.tif: [testng] 08:06:53,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:06:53,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_08-06-53.log] [testng] 08:06:53,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a482f9 - End of configuration. [testng] [2024-04-12 08:06:53,850] [pool-1-thread-2] Initializing /data/timg/eric-one-3d.tif: [testng] 08:06:53,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:06:53,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:06:53,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_08-06-53.log] [testng] 08:06:53,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa73703 - End of configuration. [testng] [2024-04-12 08:06:55,783] [pool-1-thread-8] Initializing /data/timg/E1-v2(11 som).tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS