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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins15136948993672522137.sh + '[' mng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4180_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:08:22,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:08:22,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:08:22,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:08:22,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:08:22,229 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:08:22,229 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:08:22,230 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:08:22,230 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:08:22,231 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 08:08:22,232 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 08:08:22,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 08:08:22,245] [main] java.version = 1.8.0_342 [testng] 08:08:22,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:08:22,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:22,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-08-22.log] [testng] 08:08:22,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 08:08:22,331] [main] testng.directory = /data [testng] [2024-04-12 08:08:22,331] [main] testng.configDirectory = /config [testng] [2024-04-12 08:08:22,344] [main] testng.multiplier = 1.0 [testng] [2024-04-12 08:08:22,344] [main] testng.in-memory = false [testng] [2024-04-12 08:08:22,344] [main] testng.allow-missing = false [testng] [2024-04-12 08:08:22,345] [main] user.language = en [testng] [2024-04-12 08:08:22,345] [main] user.country = ${user.country} [testng] [2024-04-12 08:08:22,345] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 08:08:23,609] [main] ---------------------------------------- [testng] [2024-04-12 08:08:23,609] [main] Total files: 78 [testng] [2024-04-12 08:08:23,609] [main] Scan time: 1.264 s (16 ms/file) [testng] [2024-04-12 08:08:23,609] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 78 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 08:08:38,615] [pool-1-thread-1] Initializing /data/images/I01SCRL.mng: [testng] 08:08:38,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:08:38,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_08-08-38.log] [testng] 08:08:38,619 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a3c004 - End of configuration. [testng] [2024-04-12 08:08:38,678] [pool-1-thread-12] Initializing /data/images/png/Delta-rgbEight.png: [testng] 08:08:38,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:08:38,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_08-08-38.log] [testng] 08:08:38,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@567235c5 - End of configuration. [testng] [2024-04-12 08:08:38,686] [pool-1-thread-11] Initializing /data/images/Delta-gray1.mng: [testng] 08:08:38,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:08:38,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_08-08-38.log] [testng] 08:08:38,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea482ef - End of configuration. [testng] [2024-04-12 08:08:38,709] [pool-1-thread-10] Initializing /data/images/MNGTERM0.mng: [testng] 08:08:38,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:08:38,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_08-08-38.log] [testng] 08:08:38,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c675e3f - End of configuration. [testng] [2024-04-12 08:08:38,726] [pool-1-thread-9] Initializing /data/images/PNGBASxx.mng: [testng] 08:08:38,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:08:38,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_08-08-38.log] [testng] 08:08:38,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@554b5c27 - End of configuration. [testng] [2024-04-12 08:08:38,799] [pool-1-thread-8] Initializing /data/images/MNGTERM3-4.mng: [testng] 08:08:38,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:08:38,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_08-08-38.log] [testng] 08:08:38,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a0aac13 - End of configuration. [testng] [2024-04-12 08:08:38,842] [pool-1-thread-7] Initializing /data/images/PNGGxxxx.mng: [testng] 08:08:38,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:08:38,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_08-08-38.log] [testng] 08:08:38,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c91a88 - End of configuration. [testng] [2024-04-12 08:08:38,865] [pool-1-thread-6] Initializing /data/images/PROM-BASN-zfil.mng: [testng] 08:08:38,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:08:38,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_08-08-38.log] [testng] 08:08:38,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78b469ac - End of configuration. [testng] [2024-04-12 08:08:38,888] [pool-1-thread-5] Initializing /data/images/Delta-gray16.mng: [testng] 08:08:38,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:08:38,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_08-08-38.log] [testng] 08:08:38,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66f8ec40 - End of configuration. [testng] [2024-04-12 08:08:38,911] [pool-1-thread-4] Initializing /data/images/png/PROM-zfil.png: [testng] 08:08:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:08:38,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_08-08-38.log] [testng] 08:08:38,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f80ba9b - End of configuration. [testng] [2024-04-12 08:08:38,917] [pool-1-thread-3] Initializing /data/images/MNGTERM3-8.mng: [testng] 08:08:38,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:08:38,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_08-08-38.log] [testng] 08:08:38,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d167824 - End of configuration. [testng] [2024-04-12 08:08:38,937] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a8w.mng: [testng] 08:08:38,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:08:38,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:08:38,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_08-08-38.log] [testng] 08:08:38,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dba8d31 - End of configuration. [testng] [2024-04-12 08:08:40,833] [pool-1-thread-4] Initializing /data/images/Delta-gray-a16w.mng: [testng] [2024-04-12 08:08:40,856] [pool-1-thread-1] Initializing /data/images/png/Delta-gray-aEightB.png: [testng] [2024-04-12 08:08:40,859] [pool-1-thread-12] Initializing /data/images/MNGTERM3-1.mng: [testng] [2024-04-12 08:08:40,877] [pool-1-thread-3] Initializing /data/images/Delta-gray-a8w.mng: [testng] [2024-04-12 08:08:40,906] [pool-1-thread-8] Initializing /data/images/Delta-rgb-a16b.mng: [testng] [2024-04-12 08:08:40,937] [pool-1-thread-5] Initializing /data/images/Waves2.mng: [testng] [2024-04-12 08:08:40,947] [pool-1-thread-10] Initializing /data/images/png/MNGPAST16a.png: [testng] [2024-04-12 08:08:40,951] [pool-1-thread-11] Initializing /data/images/png/MNGPAST-eightB.png: [testng] [2024-04-12 08:08:40,956] [pool-1-thread-7] Initializing /data/images/MNGTERM3-2.mng: [testng] [2024-04-12 08:08:40,974] [pool-1-thread-6] Initializing /data/roger/Well C4_01.mng: [testng] [2024-04-12 08:08:44,259] [pool-1-thread-2] Initializing /data/images/png/Delta-gray-aEightW.png: [testng] [2024-04-12 08:08:44,262] [pool-1-thread-9] Initializing /data/images/home.mng: [testng] [2024-04-12 08:08:44,661] [pool-1-thread-2] Initializing /data/images/scrollOne.mng: [testng] [2024-04-12 08:08:44,669] [pool-1-thread-10] Initializing /data/roger/Well E6_01.mng: [testng] [2024-04-12 08:08:47,433] [pool-1-thread-1] Initializing /data/images/PNGCH-CC.mng: [testng] [2024-04-12 08:08:47,483] [pool-1-thread-11] Initializing /data/images/png/MNGPAST16b.png: [testng] [2024-04-12 08:08:47,521] [pool-1-thread-5] Initializing /data/images/MNGTERM1.mng: [testng] [2024-04-12 08:08:47,541] [pool-1-thread-9] Initializing /data/images/scrollTwo.mng: [testng] [2024-04-12 08:08:47,567] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightA.png: [testng] [2024-04-12 08:08:47,601] [pool-1-thread-7] Initializing /data/images/png/PROM-repl.png: [testng] [2024-04-12 08:08:47,741] [pool-1-thread-3] Initializing /data/images/Delta-gray-a8b.mng: [testng] [2024-04-12 08:08:47,790] [pool-1-thread-8] Initializing /data/images/Delta-gray8.mng: [testng] [2024-04-12 08:08:47,824] [pool-1-thread-11] Initializing /data/images/png/Delta-grayFour.png: [testng] [2024-04-12 08:08:47,829] [pool-1-thread-4] Initializing /data/images/png/Delta-gray-a16w.png: [testng] [2024-04-12 08:08:47,839] [pool-1-thread-2] Initializing /data/images/PROM-BASI-zfil.mng: [testng] [2024-04-12 08:08:47,917] [pool-1-thread-12] Initializing /data/images/MNGTERM3-3.mng: [testng] [2024-04-12 08:08:48,000] [pool-1-thread-1] Initializing /data/roger/Well B3_01.mng: [testng] [2024-04-12 08:08:50,672] [pool-1-thread-7] Initializing /data/images/png/Delta-rgb-a16b.png: [testng] [2024-04-12 08:08:50,698] [pool-1-thread-5] Initializing /data/images/PNGFxxxx.mng: [testng] [2024-04-12 08:08:50,714] [pool-1-thread-4] Initializing /data/images/Waves1.mng: [testng] [2024-04-12 08:08:50,742] [pool-1-thread-11] Initializing /data/images/png/Delta-grayTwo.png: [testng] [2024-04-12 08:08:50,801] [pool-1-thread-7] Initializing /data/images/Delta-rgbEight.mng: [testng] [2024-04-12 08:08:50,837] [pool-1-thread-8] Initializing /data/images/MNGPAST_eightA.mng: [testng] [2024-04-12 08:08:50,860] [pool-1-thread-12] Initializing /data/images/Waves3.mng: [testng] [2024-04-12 08:08:50,927] [pool-1-thread-11] Initializing /data/images/MNGTERM3-6.mng: [testng] [2024-04-12 08:08:50,947] [pool-1-thread-3] Initializing /data/images/png/Delta-grayEight.png: [testng] [2024-04-12 08:08:50,949] [pool-1-thread-2] Initializing /data/images/PROM-BASI-repl.mng: [testng] [2024-04-12 08:08:50,966] [pool-1-thread-4] Initializing /data/images/Delta-gray4.mng: [testng] [2024-04-12 08:08:51,040] [pool-1-thread-5] Initializing /data/images/MNGTERM3-0.mng: [testng] [2024-04-12 08:08:51,108] [pool-1-thread-7] Initializing /data/images/buttonTwo.mng: [testng] [2024-04-12 08:08:51,140] [pool-1-thread-8] Initializing /data/images/MNGPAST16b.mng: [testng] [2024-04-12 08:08:51,148] [pool-1-thread-12] Initializing /data/images/png/Delta-rgb-aEightB.png: [testng] [2024-04-12 08:08:51,171] [pool-1-thread-3] Initializing /data/images/png/Delta-grayOne.png: [testng] [2024-04-12 08:08:51,184] [pool-1-thread-9] Initializing /data/images/png/Delta-rgb-aEightW.png: [testng] [2024-04-12 08:08:51,250] [pool-1-thread-11] Initializing /data/images/Delta-gray-a16b.mng: [testng] [2024-04-12 08:08:51,294] [pool-1-thread-5] Initializing /data/images/MNGPAST_eightB.mng: [testng] [2024-04-12 08:08:51,300] [pool-1-thread-4] Initializing /data/images/Delta-gray2.mng: [testng] [2024-04-12 08:08:51,358] [pool-1-thread-2] Initializing /data/images/png/Delta-rgb-a16w.png: [testng] [2024-04-12 08:08:51,360] [pool-1-thread-7] Initializing /data/images/Delta-rgb-a16w.mng: [testng] [2024-04-12 08:08:51,376] [pool-1-thread-12] Initializing /data/images/PROM-BASN-repl.mng: [testng] [2024-04-12 08:08:51,392] [pool-1-thread-3] Initializing /data/images/PNGSxxxx.mng: [testng] [2024-04-12 08:08:51,466] [pool-1-thread-9] Initializing /data/images/png/Delta-gray-a16b.png: [testng] [2024-04-12 08:08:51,469] [pool-1-thread-8] Initializing /data/images/png/Delta-rgb16.png: [testng] [2024-04-12 08:08:51,536] [pool-1-thread-5] Initializing /data/images/MNGPAST16a.mng: [testng] [2024-04-12 08:08:51,549] [pool-1-thread-2] Initializing /data/images/PNGCMSPx.mng: [testng] [2024-04-12 08:08:51,618] [pool-1-thread-8] Initializing /data/images/MNGTERM3-5.mng: [testng] [2024-04-12 08:08:51,630] [pool-1-thread-4] Initializing /data/images/scrollThree.mng: [testng] [2024-04-12 08:08:51,651] [pool-1-thread-9] Initializing /data/images/australia1.mng: [testng] [2024-04-12 08:08:51,745] [pool-1-thread-5] Initializing /data/images/buttonOne.mng: [testng] [2024-04-12 08:08:51,752] [pool-1-thread-11] Initializing /data/images/MNGTERM3-7.mng: [testng] [2024-04-12 08:08:51,814] [pool-1-thread-12] Initializing /data/images/DUTCH-two.mng: [testng] [2024-04-12 08:08:51,864] [pool-1-thread-7] Initializing /data/images/Delta-rgb16.mng: [testng] [2024-04-12 08:08:51,896] [pool-1-thread-8] Initializing /data/images/MNGTERM2.mng: [testng] [2024-04-12 08:08:52,011] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a8b.mng: [testng] [2024-04-12 08:08:52,034] [pool-1-thread-4] Initializing /data/roger/Well D2_01.mng: [testng] [2024-04-12 08:08:54,969] [pool-1-thread-3] Initializing /data/images/png/Delta-graySixteen.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 4134, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 56 seconds Finished: SUCCESS