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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6689965319519561475.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4199_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:19:25,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:19:25,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:19:25,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:19:25,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:19:25,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:19:25,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:19:25,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:19:25,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:19:25,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:19:25,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:19:25,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:19:25,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:19:25,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:19:25,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:19:25,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:19:25,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:19:25,427 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:19:25,427 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:19:25,427 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:19:25,428 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:19:25,428 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:19:25,429 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:19:25,430 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 342 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 08:19:25,443] [main] java.version = 1.8.0_342 [testng] 08:19:25,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:19:25,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:25,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-19-25.log] [testng] 08:19:25,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 08:19:25,512] [main] testng.directory = /data [testng] [2024-04-12 08:19:25,513] [main] testng.configDirectory = /config [testng] [2024-04-12 08:19:25,596] [main] testng.multiplier = 1.0 [testng] [2024-04-12 08:19:25,597] [main] testng.in-memory = false [testng] [2024-04-12 08:19:25,597] [main] testng.allow-missing = false [testng] [2024-04-12 08:19:25,597] [main] user.language = en [testng] [2024-04-12 08:19:25,597] [main] user.country = ${user.country} [testng] [2024-04-12 08:19:25,597] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 08:19:26,644] [main] ---------------------------------------- [testng] [2024-04-12 08:19:26,644] [main] Total files: 21 [testng] [2024-04-12 08:19:26,644] [main] Scan time: 1.047 s (49 ms/file) [testng] [2024-04-12 08:19:26,644] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 08:19:28,640] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 08:19:28,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:19:28,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_08-19-28.log] [testng] 08:19:28,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@780f3acb - End of configuration. [testng] [2024-04-12 08:19:28,742] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 08:19:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:19:28,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_08-19-28.log] [testng] 08:19:28,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d7e1334 - End of configuration. [testng] [2024-04-12 08:19:28,759] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 08:19:28,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:19:28,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_08-19-28.log] [testng] 08:19:28,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ccfd43f - End of configuration. [testng] [2024-04-12 08:19:28,772] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 08:19:28,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:19:28,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_08-19-28.log] [testng] 08:19:28,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e119aa - End of configuration. [testng] [2024-04-12 08:19:28,799] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 08:19:28,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:19:28,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_08-19-28.log] [testng] 08:19:28,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e4c7e67 - End of configuration. [testng] [2024-04-12 08:19:28,813] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 08:19:28,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:19:28,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_08-19-28.log] [testng] 08:19:28,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ccd569 - End of configuration. [testng] [2024-04-12 08:19:28,824] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 08:19:28,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:19:28,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_08-19-28.log] [testng] 08:19:28,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d3244b - End of configuration. [testng] [2024-04-12 08:19:28,840] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 08:19:28,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:19:28,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_08-19-28.log] [testng] 08:19:28,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc6640 - End of configuration. [testng] [2024-04-12 08:19:28,849] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 08:19:28,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:19:28,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:28,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_08-19-28.log] [testng] 08:19:28,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34582ed - End of configuration. [testng] [2024-04-12 08:19:29,102] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 08:19:29,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:19:29,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:29,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_08-19-29.log] [testng] 08:19:29,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b454474 - End of configuration. [testng] [2024-04-12 08:19:29,115] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 08:19:29,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:19:29,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:29,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_08-19-29.log] [testng] 08:19:29,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a861750 - End of configuration. [testng] [2024-04-12 08:19:29,123] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 08:19:29,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:19:29,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:19:29,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_08-19-29.log] [testng] 08:19:29,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f578de3 - End of configuration. [testng] [2024-04-12 08:19:31,492] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-04-12 08:19:31,511] [pool-1-thread-12] Initializing /data/samples/spinfox.png: [testng] [2024-04-12 08:19:31,518] [pool-1-thread-11] Initializing /data/samples/william_wong01.png: [testng] [2024-04-12 08:19:31,529] [pool-1-thread-5] Initializing /data/samples/william_wong05.png: [testng] [2024-04-12 08:19:31,550] [pool-1-thread-8] Initializing /data/colin/test.sfstdge.png: [testng] [2024-04-12 08:19:31,565] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-04-12 08:19:31,576] [pool-1-thread-1] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-04-12 08:19:31,585] [pool-1-thread-3] Initializing /data/samples/chompy2.png: [testng] [2024-04-12 08:19:31,590] [pool-1-thread-6] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS