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Started by upstream project "BIOFORMATS-test-repo" build number 266 originally caused by: Started by upstream project "Trigger" build number 289 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8624805823221017949.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42029_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:07:36,550 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:07:36,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:07:36,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:36,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:07:36,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:07:36,553 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:07:36,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:07:36,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:36,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:07:36,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:07:36,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:07:36,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:07:36,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:07:36,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:07:36,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:07:36,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:07:36,733 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:07:36,733 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:07:36,733 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:07:36,733 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:07:36,733 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:07:36,734 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:07:36,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 180 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-24 02:07:36,742] [main] java.version = 17.0.2 [testng] 02:07:36,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:07:36,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:36,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-24_02-07-36.log] [testng] 02:07:36,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-24 02:07:36,785] [main] testng.directory = /data [testng] [2024-11-24 02:07:36,785] [main] testng.configDirectory = /config [testng] [2024-11-24 02:07:36,794] [main] testng.multiplier = 1.0 [testng] [2024-11-24 02:07:36,794] [main] testng.in-memory = false [testng] [2024-11-24 02:07:36,794] [main] testng.allow-missing = false [testng] [2024-11-24 02:07:36,795] [main] user.language = en [testng] [2024-11-24 02:07:36,795] [main] user.country = ${user.country} [testng] [2024-11-24 02:07:36,795] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-24 02:10:30,237] [main] ---------------------------------------- [testng] [2024-11-24 02:10:30,237] [main] Total files: 268 [testng] [2024-11-24 02:10:30,237] [main] Scan time: 173.442 s (647 ms/file) [testng] [2024-11-24 02:10:30,237] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-24 02:16:11,795] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 02:16:11,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:16:11,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:11,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-24_02-16-11.log] [testng] 02:16:11,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f3563f - End of configuration. [testng] [2024-11-24 02:16:12,528] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 02:16:12,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:16:12,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:12,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-24_02-16-12.log] [testng] 02:16:12,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@486e00c2 - End of configuration. [testng] [2024-11-24 02:16:13,100] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 02:16:13,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:16:13,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:13,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-24_02-16-13.log] [testng] 02:16:13,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f27155 - End of configuration. [testng] [2024-11-24 02:16:13,706] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:16:13,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:16:13,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:13,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-24_02-16-13.log] [testng] 02:16:13,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c63c66b - End of configuration. [testng] [2024-11-24 02:16:14,280] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 02:16:14,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:16:14,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:14,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-24_02-16-14.log] [testng] 02:16:14,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d6f31f6 - End of configuration. [testng] [2024-11-24 02:16:14,840] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 02:16:14,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:16:14,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:14,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-24_02-16-14.log] [testng] 02:16:14,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e203ee - End of configuration. [testng] [2024-11-24 02:16:15,311] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 02:16:15,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:16:15,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:15,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-24_02-16-15.log] [testng] 02:16:15,313 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4347985a - End of configuration. [testng] [2024-11-24 02:16:16,608] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 02:16:16,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:16:16,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:16,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-24_02-16-16.log] [testng] 02:16:16,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fd9e3cd - End of configuration. [testng] [2024-11-24 02:16:17,166] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 02:16:17,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:16:17,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:17,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-24_02-16-17.log] [testng] 02:16:17,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a49906 - End of configuration. [testng] [2024-11-24 02:16:17,758] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 02:16:17,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:16:17,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:17,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-24_02-16-17.log] [testng] 02:16:17,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15afdac1 - End of configuration. [testng] [2024-11-24 02:16:17,931] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 02:16:17,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:16:17,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:17,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-24_02-16-17.log] [testng] 02:16:17,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30efffc4 - End of configuration. [testng] [2024-11-24 02:16:20,056] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:16:20,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:16:20,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:20,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-24_02-16-20.log] [testng] 02:16:20,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f53afc4 - End of configuration. [testng] [2024-11-24 02:16:26,489] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-24 02:16:28,330] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-24 02:16:28,844] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-24 02:16:29,065] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-24 02:16:30,447] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-11-24 02:16:32,367] [pool-1-thread-5] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-24 02:16:32,833] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-11-24 02:16:34,454] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-24 02:16:38,869] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-24 02:16:41,429] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-24 02:16:42,524] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-24 02:16:43,075] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-24 02:16:44,533] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-11-24 02:16:45,394] [pool-1-thread-5] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-11-24 02:16:48,356] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-24 02:16:50,059] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-24 02:16:50,699] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-11-24 02:16:55,418] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-24 02:16:58,392] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-24 02:17:01,232] [pool-1-thread-9] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-24 02:17:01,801] [pool-1-thread-8] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-11-24 02:17:04,317] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-11-24 02:17:04,530] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-24 02:17:05,908] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-24 02:17:06,886] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-24 02:17:07,263] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-24 02:17:08,216] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-11-24 02:17:10,060] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-24 02:17:13,888] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-11-24 02:17:16,411] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-24 02:17:17,430] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-24 02:17:19,090] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-11-24 02:17:20,157] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-24 02:17:21,060] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-24 02:17:25,073] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-24 02:17:29,281] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-24 02:17:30,256] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-24 02:17:31,180] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-24 02:17:31,733] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-24 02:17:34,280] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-24 02:17:36,708] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-24 02:17:39,393] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-24 02:17:41,008] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-24 02:17:42,173] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-11-24 02:17:44,872] [pool-1-thread-6] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-24 02:17:45,154] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-24 02:17:46,125] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-24 02:17:49,022] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-24 02:17:51,738] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-11-24 02:17:54,821] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-11-24 02:17:57,454] [pool-1-thread-5] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-24 02:17:59,214] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-24 02:18:01,864] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-11-24 02:18:05,199] [pool-1-thread-12] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-24 02:18:06,330] [pool-1-thread-4] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-24 02:18:08,803] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-24 02:18:09,662] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-24 02:18:10,054] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-24 02:18:14,498] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-11-24 02:18:15,314] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-24 02:18:16,871] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-24 02:18:20,090] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-24 02:18:20,909] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-24 02:18:21,397] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-11-24 02:18:22,638] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-24 02:18:22,926] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-24 02:18:25,496] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-24 02:18:26,375] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-24 02:18:28,887] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-24 02:18:31,809] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-24 02:18:33,942] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-24 02:18:36,275] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-24 02:18:38,101] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-24 02:18:40,792] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-24 02:18:42,235] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-24 02:18:43,658] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-24 02:18:46,324] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-24 02:18:47,873] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-24 02:18:50,376] [pool-1-thread-5] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-24 02:18:51,509] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-24 02:18:51,929] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-11-24 02:18:53,602] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-24 02:18:54,436] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-24 02:18:55,496] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-24 02:18:58,851] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-24 02:18:59,730] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-24 02:19:00,243] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-24 02:19:01,949] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-24 02:19:04,727] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-24 02:19:06,223] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-24 02:19:08,586] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-24 02:19:09,478] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-24 02:19:10,057] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-24 02:19:11,119] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-24 02:19:11,787] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-24 02:19:13,044] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-24 02:19:14,183] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-24 02:19:14,910] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-24 02:19:16,218] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-24 02:19:18,132] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-24 02:19:19,260] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-11-24 02:19:20,232] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-24 02:19:21,179] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-24 02:19:23,466] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-24 02:19:25,503] [pool-1-thread-12] Initializing /data/steve/FITS/M13.fits: [testng] [2024-11-24 02:19:25,661] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-24 02:19:26,102] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-24 02:19:28,817] [pool-1-thread-9] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-24 02:19:33,556] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-24 02:19:35,570] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-24 02:19:36,567] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-24 02:19:37,879] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-24 02:19:39,614] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-24 02:19:42,212] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-24 02:19:43,141] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-11-24 02:19:44,437] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-24 02:19:46,784] [pool-1-thread-3] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-24 02:19:49,180] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-11-24 02:19:50,001] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-24 02:19:51,100] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-24 02:19:54,030] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-24 02:19:54,426] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-24 02:19:55,162] [pool-1-thread-4] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-24 02:19:57,652] [pool-1-thread-2] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-24 02:20:00,468] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-24 02:20:02,983] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-24 02:20:06,336] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-24 02:20:07,986] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-24 02:20:10,784] [pool-1-thread-7] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-24 02:20:14,237] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-24 02:20:15,305] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-24 02:20:17,067] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-24 02:20:17,920] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-24 02:20:19,376] [pool-1-thread-8] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-24 02:20:20,538] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-24 02:20:21,546] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-24 02:20:23,825] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-24 02:20:24,866] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-24 02:20:25,817] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-24 02:20:26,689] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-24 02:20:27,478] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-24 02:20:28,143] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-24 02:20:28,696] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-24 02:20:30,656] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-24 02:20:31,924] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-24 02:20:34,392] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-24 02:20:35,816] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-24 02:20:36,853] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 minutes 16 seconds Finished: SUCCESS