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Started by upstream project "BIOFORMATS-test-repo" build number 266 originally caused by: Started by upstream project "Trigger" build number 289 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins841818099789383330.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42069_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:12:42,053 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:12:42,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:12:42,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:12:42,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:12:42,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:12:42,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:12:42,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:12:42,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:12:42,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:12:42,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:12:42,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:12:42,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:12:42,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:12:42,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:12:42,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:12:42,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:12:42,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:12:42,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:12:42,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:12:42,242 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:12:42,242 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:12:42,243 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:12:42,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-24 04:12:42,251] [main] java.version = 17.0.2 [testng] 04:12:42,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:12:42,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:42,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-24_04-12-42.log] [testng] 04:12:42,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-24 04:12:42,296] [main] testng.directory = /data [testng] [2024-11-24 04:12:42,297] [main] testng.configDirectory = /config [testng] [2024-11-24 04:12:42,305] [main] testng.multiplier = 1.0 [testng] [2024-11-24 04:12:42,306] [main] testng.in-memory = false [testng] [2024-11-24 04:12:42,306] [main] testng.allow-missing = false [testng] [2024-11-24 04:12:42,306] [main] user.language = en [testng] [2024-11-24 04:12:42,306] [main] user.country = ${user.country} [testng] [2024-11-24 04:12:42,306] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-24 04:15:19,641] [main] ---------------------------------------- [testng] [2024-11-24 04:15:19,642] [main] Total files: 15735 [testng] [2024-11-24 04:15:19,642] [main] Scan time: 157.335 s (9 ms/file) [testng] [2024-11-24 04:15:19,642] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-24 04:19:32,463] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 04:19:32,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:19:32,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:32,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-24_04-19-32.log] [testng] 04:19:32,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11fa9d70 - End of configuration. [testng] [2024-11-24 04:19:33,807] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 04:19:33,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:19:33,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:33,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-24_04-19-33.log] [testng] 04:19:33,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f973543 - End of configuration. [testng] [2024-11-24 04:19:35,657] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 04:19:35,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:19:35,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:35,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-24_04-19-35.log] [testng] 04:19:35,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@356bd7ce - End of configuration. [testng] [2024-11-24 04:19:37,116] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 04:19:37,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:19:37,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:37,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-24_04-19-37.log] [testng] 04:19:37,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7511a47e - End of configuration. [testng] [2024-11-24 04:19:39,872] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 04:19:39,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:19:39,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:39,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-24_04-19-39.log] [testng] 04:19:39,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182bcf70 - End of configuration. [testng] [2024-11-24 04:19:41,939] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 04:19:41,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:19:41,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:41,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-24_04-19-41.log] [testng] 04:19:41,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6fbe72 - End of configuration. [testng] [2024-11-24 04:19:43,711] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 04:19:43,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:19:43,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:43,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-24_04-19-43.log] [testng] 04:19:43,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43e9a197 - End of configuration. [testng] [2024-11-24 04:19:45,192] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 04:19:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:19:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:45,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-24_04-19-45.log] [testng] 04:19:45,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788e3003 - End of configuration. [testng] [2024-11-24 04:19:46,551] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:19:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:19:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:46,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-24_04-19-46.log] [testng] 04:19:46,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e59fa94 - End of configuration. [testng] [2024-11-24 04:19:47,781] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 04:19:47,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:19:47,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:47,782 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-24_04-19-47.log] [testng] 04:19:47,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ec8396 - End of configuration. [testng] [2024-11-24 04:19:49,189] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 04:19:49,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:19:49,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:49,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-24_04-19-49.log] [testng] 04:19:49,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a8d3a67 - End of configuration. [testng] [2024-11-24 04:19:50,547] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 04:19:50,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:19:50,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:19:50,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-24_04-19-50.log] [testng] 04:19:50,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ee06d8f - End of configuration. [testng] [2024-11-24 04:20:21,320] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-24 04:20:33,781] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-24 04:20:38,203] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-24 04:21:16,577] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-24 04:24:02,397] [pool-1-thread-4] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-24 04:24:04,958] [pool-1-thread-5] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-24 04:24:26,251] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-24 04:24:54,533] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-24 04:25:49,597] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-24 04:26:13,093] [pool-1-thread-5] Initializing /data/converted/michel/a.tif: [testng] [2024-11-24 04:26:20,604] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-24 04:26:32,770] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-24 04:26:46,827] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-24 04:27:04,369] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-24 04:27:16,746] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-24 04:27:34,791] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-24 04:27:40,195] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-24 04:27:42,999] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-24 04:28:01,260] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-24 04:28:02,663] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-24 04:28:28,852] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-24 04:28:44,607] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-24 04:28:49,250] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-24 04:29:07,047] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-24 04:29:27,314] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-24 04:29:31,309] [pool-1-thread-6] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-24 04:29:44,731] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-24 04:29:49,596] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-24 04:30:02,059] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-24 04:30:20,191] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-24 04:30:44,220] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-24 04:31:09,709] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-24 04:31:30,698] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-24 04:31:48,250] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-24 04:31:51,489] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-24 04:34:27,828] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-24 04:35:16,574] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-24 04:36:08,211] [pool-1-thread-5] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-24 04:36:45,590] [pool-1-thread-5] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-24 04:36:54,835] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-24 04:37:35,443] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-24 04:37:54,856] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-24 04:38:17,298] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-24 04:38:32,157] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-24 04:38:48,535] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-24 04:41:03,753] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-24 04:43:28,825] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-24 04:46:11,401] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-24 04:47:21,639] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-24 04:49:05,496] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-24 04:50:33,863] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-24 04:51:09,490] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-24 04:57:21,430] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-24 04:58:06,579] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-24 04:58:27,948] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-24 04:58:49,197] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-24 04:59:39,037] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-24 05:02:11,767] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-24 05:02:53,710] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-24 05:03:01,834] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-24 05:04:01,651] [pool-1-thread-1] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-24 05:04:22,990] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-24 05:07:42,072] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-24 05:10:00,847] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-24 05:10:06,144] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-24 05:10:14,988] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-24 05:11:12,627] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-24 05:11:26,509] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-24 05:11:36,953] [pool-1-thread-7] Initializing /data/converted/michel/c.tif: [testng] [2024-11-24 05:12:10,898] [pool-1-thread-8] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-24 05:12:38,081] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-24 05:12:41,060] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-24 05:12:50,706] [pool-1-thread-10] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-24 05:13:45,949] [pool-1-thread-8] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-24 05:16:12,569] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-24 05:17:51,041] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-24 05:17:54,344] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-24 05:19:06,125] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-24 05:20:33,449] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-24 05:22:16,112] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-24 05:25:21,735] [pool-1-thread-4] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-24 05:25:57,423] [pool-1-thread-7] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-24 05:26:18,574] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-24 05:27:29,791] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-24 05:28:56,602] [pool-1-thread-10] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-24 05:29:05,230] [pool-1-thread-7] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-24 05:29:35,911] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-24 05:29:38,598] [pool-1-thread-8] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-24 05:29:54,576] [pool-1-thread-10] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-24 05:30:21,376] [pool-1-thread-7] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-24 05:30:24,035] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-24 05:30:39,834] [pool-1-thread-10] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-24 05:31:15,507] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-24 05:31:18,333] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-24 05:31:23,713] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-24 05:32:27,871] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-24 05:33:04,655] [pool-1-thread-7] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-24 05:33:29,064] [pool-1-thread-12] Initializing /data/converted/michel/d.tif: [testng] [2024-11-24 05:33:32,502] [pool-1-thread-5] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-24 05:34:22,645] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-24 05:34:27,949] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-24 05:34:59,978] [pool-1-thread-5] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-24 05:35:13,166] [pool-1-thread-12] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-24 05:35:28,490] [pool-1-thread-6] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-24 05:36:05,585] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-24 05:36:21,298] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-24 05:36:47,897] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-24 05:36:52,986] [pool-1-thread-4] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-24 05:37:22,277] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-24 05:37:35,565] [pool-1-thread-4] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-24 05:37:37,981] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-24 05:37:52,547] [pool-1-thread-9] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-24 05:38:11,457] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 06:26:43,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:26:43,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:26:43,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-24_06-26-43.log] [testng] 06:26:43,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d11e457 - End of configuration. [testng] 06:31:58,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:31:58,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:31:58,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-24_06-31-58.log] [testng] 06:31:58,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 139 minutes 20 seconds Finished: SUCCESS