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Started by upstream project "BIOFORMATS-test-repo" build number 267 originally caused by: Started by upstream project "Trigger" build number 290 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins6758844552169998828.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_42193_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:27:35,933 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:27:35,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:27:35,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:27:35,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:27:35,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:27:35,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:27:35,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:27:35,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:27:35,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:27:35,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:27:35,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:27:35,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:27:36,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:27:36,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:27:36,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:27:36,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:27:36,194 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:27:36,194 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:27:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:27:36,195 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:27:36,195 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:27:36,196 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:27:36,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-25 02:27:36,206] [main] java.version = 1.8.0_342 [testng] 02:27:36,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:27:36,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:36,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_02-27-36.log] [testng] 02:27:36,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-25 02:27:36,256] [main] testng.directory = /data [testng] [2024-11-25 02:27:36,256] [main] testng.configDirectory = /config [testng] [2024-11-25 02:27:36,267] [main] testng.multiplier = 1.0 [testng] [2024-11-25 02:27:36,268] [main] testng.in-memory = false [testng] [2024-11-25 02:27:36,268] [main] testng.allow-missing = false [testng] [2024-11-25 02:27:36,268] [main] user.language = fr [testng] [2024-11-25 02:27:36,268] [main] user.country = FR [testng] [2024-11-25 02:27:36,268] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-25 02:32:10,109] [main] ---------------------------------------- [testng] [2024-11-25 02:32:10,109] [main] Total files: 268 [testng] [2024-11-25 02:32:10,109] [main] Scan time: 273.84 s (1021 ms/file) [testng] [2024-11-25 02:32:10,109] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-25 02:38:27,308] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] 02:38:27,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:38:27,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:27,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-25_02-38-27.log] [testng] 02:38:27,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e2a2ee - End of configuration. [testng] [2024-11-25 02:38:27,607] [pool-1-thread-12] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] 02:38:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:38:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:27,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-25_02-38-27.log] [testng] 02:38:27,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f723e1b - End of configuration. [testng] [2024-11-25 02:38:28,288] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] 02:38:28,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:38:28,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:28,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_02-38-28.log] [testng] 02:38:28,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4722fc5e - End of configuration. [testng] [2024-11-25 02:38:28,731] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] 02:38:28,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:38:28,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:28,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-25_02-38-28.log] [testng] 02:38:28,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3016976b - End of configuration. [testng] [2024-11-25 02:38:30,184] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 02:38:30,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:38:30,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:30,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-25_02-38-30.log] [testng] 02:38:30,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@273c30e2 - End of configuration. [testng] [2024-11-25 02:38:30,613] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] 02:38:30,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:38:30,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:30,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-25_02-38-30.log] [testng] 02:38:30,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ad04e2 - End of configuration. [testng] [2024-11-25 02:38:30,743] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] 02:38:30,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:38:30,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:30,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-25_02-38-30.log] [testng] 02:38:30,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57d4cfc5 - End of configuration. [testng] [2024-11-25 02:38:31,152] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] 02:38:31,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:38:31,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:31,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-25_02-38-31.log] [testng] 02:38:31,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d6f58ef - End of configuration. [testng] [2024-11-25 02:38:32,750] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 02:38:32,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:38:32,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:32,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-25_02-38-32.log] [testng] 02:38:32,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b701b3b - End of configuration. [testng] [2024-11-25 02:38:33,215] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 02:38:33,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:38:33,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:33,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-25_02-38-33.log] [testng] 02:38:33,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4df4968 - End of configuration. [testng] [2024-11-25 02:38:33,731] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] 02:38:33,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:38:33,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:33,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-25_02-38-33.log] [testng] 02:38:33,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@159abf55 - End of configuration. [testng] [2024-11-25 02:38:34,199] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 02:38:34,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:38:34,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:38:34,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_02-38-34.log] [testng] 02:38:34,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5268b04f - End of configuration. [testng] [2024-11-25 02:38:37,882] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-11-25 02:38:39,077] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-11-25 02:38:40,813] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-11-25 02:38:41,447] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-11-25 02:38:42,984] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-11-25 02:38:44,519] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-11-25 02:38:46,125] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-11-25 02:38:46,800] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-11-25 02:38:47,231] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-11-25 02:38:50,492] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-11-25 02:38:51,103] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-11-25 02:38:55,791] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-11-25 02:38:56,089] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-11-25 02:38:57,019] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-11-25 02:39:00,254] [pool-1-thread-7] Initializing /data/steve/FITS/M51.fits: [testng] [2024-11-25 02:39:00,488] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-11-25 02:39:02,018] [pool-1-thread-1] Initializing /data/steve/FITS/M13.fits: [testng] [2024-11-25 02:39:03,163] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-11-25 02:39:05,345] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-11-25 02:39:07,477] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-11-25 02:39:10,464] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-11-25 02:39:12,968] [pool-1-thread-3] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-11-25 02:39:13,456] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-11-25 02:39:14,276] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-11-25 02:39:14,686] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-11-25 02:39:15,500] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-11-25 02:39:22,992] [pool-1-thread-6] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-11-25 02:39:24,997] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-11-25 02:39:27,736] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-11-25 02:39:28,178] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-11-25 02:39:29,420] [pool-1-thread-11] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-11-25 02:39:32,383] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-11-25 02:39:33,260] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-11-25 02:39:34,217] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-11-25 02:39:39,364] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-11-25 02:39:40,774] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-11-25 02:39:44,475] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-11-25 02:39:47,341] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-11-25 02:39:52,044] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-11-25 02:39:52,949] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-11-25 02:39:54,326] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-11-25 02:39:55,739] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-11-25 02:39:58,645] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-11-25 02:39:59,591] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-11-25 02:40:00,643] [pool-1-thread-6] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-11-25 02:40:03,659] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-11-25 02:40:07,548] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-11-25 02:40:08,013] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-11-25 02:40:09,074] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-11-25 02:40:10,606] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-11-25 02:40:13,756] [pool-1-thread-12] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-11-25 02:40:17,555] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-11-25 02:40:17,967] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-11-25 02:40:19,035] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-11-25 02:40:19,923] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-11-25 02:40:21,233] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-11-25 02:40:21,896] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-11-25 02:40:24,125] [pool-1-thread-4] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-11-25 02:40:25,990] [pool-1-thread-8] Initializing /data/steve/FITS/M104.fits: [testng] [2024-11-25 02:40:27,616] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-11-25 02:40:29,711] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-11-25 02:40:32,422] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-11-25 02:40:33,465] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-11-25 02:40:34,418] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-11-25 02:40:35,383] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-11-25 02:40:36,244] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-11-25 02:40:39,296] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-11-25 02:40:40,451] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-11-25 02:40:45,539] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-11-25 02:40:45,926] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-11-25 02:40:50,236] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-11-25 02:40:53,298] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-11-25 02:40:57,067] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-11-25 02:41:00,450] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-11-25 02:41:03,265] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-11-25 02:41:04,302] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-11-25 02:41:05,126] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-11-25 02:41:06,017] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-11-25 02:41:07,925] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-11-25 02:41:08,931] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-11-25 02:41:10,153] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-11-25 02:41:12,399] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-11-25 02:41:16,634] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-11-25 02:41:18,066] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-11-25 02:41:21,047] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-11-25 02:41:24,009] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-11-25 02:41:24,548] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-11-25 02:41:27,255] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-11-25 02:41:30,218] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-11-25 02:41:31,032] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-11-25 02:41:33,545] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-11-25 02:41:34,270] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-11-25 02:41:39,404] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-11-25 02:41:43,387] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-11-25 02:41:44,538] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-11-25 02:41:45,739] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-11-25 02:41:48,288] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-11-25 02:41:50,129] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-11-25 02:41:53,652] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-11-25 02:41:54,949] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-11-25 02:41:56,075] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-11-25 02:41:57,593] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-11-25 02:42:01,180] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-11-25 02:42:02,242] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-11-25 02:42:02,935] [pool-1-thread-8] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-11-25 02:42:03,676] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-11-25 02:42:04,016] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-11-25 02:42:04,773] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-11-25 02:42:07,294] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-11-25 02:42:09,361] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-11-25 02:42:11,548] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-11-25 02:42:12,852] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-11-25 02:42:14,054] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-11-25 02:42:15,495] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-11-25 02:42:16,028] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-11-25 02:42:17,119] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-11-25 02:42:18,020] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-11-25 02:42:18,763] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-11-25 02:42:20,449] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-11-25 02:42:24,134] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-11-25 02:42:25,051] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-11-25 02:42:26,473] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-11-25 02:42:27,293] [pool-1-thread-2] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-11-25 02:42:28,130] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-11-25 02:42:29,304] [pool-1-thread-3] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-11-25 02:42:31,665] [pool-1-thread-8] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-11-25 02:42:32,266] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-11-25 02:42:35,113] [pool-1-thread-5] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-11-25 02:42:37,914] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-11-25 02:42:40,547] [pool-1-thread-7] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-11-25 02:42:43,119] [pool-1-thread-9] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-11-25 02:42:44,129] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-11-25 02:42:47,624] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-11-25 02:42:51,133] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-11-25 02:42:53,757] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-11-25 02:42:54,833] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-11-25 02:42:57,480] [pool-1-thread-2] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-11-25 02:43:00,595] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-11-25 02:43:01,684] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-11-25 02:43:02,119] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-11-25 02:43:06,747] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-11-25 02:43:08,389] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-11-25 02:43:09,021] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-11-25 02:43:10,138] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-11-25 02:43:11,694] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-11-25 02:43:14,480] [pool-1-thread-7] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-11-25 02:43:16,526] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-11-25 02:43:18,118] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 4 seconds Finished: SUCCESS