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Started by upstream project "BIOFORMATS-test-repo" build number 267 originally caused by: Started by upstream project "Trigger" build number 290 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16618039845303066020.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_42260_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:52:11,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:52:11,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:52:11,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:52:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:52:11,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:52:11,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:52:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:52:11,382 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:52:11,383 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:52:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:52:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:52:11,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:52:11,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:52:11,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:52:11,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:52:11,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:52:11,637 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:52:11,637 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:52:11,637 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:52:11,637 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:52:11,637 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:52:11,638 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:52:11,638 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-25 06:52:11,648] [main] java.version = 1.8.0_342 [testng] 06:52:11,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:52:11,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:52:11,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-25_06-52-11.log] [testng] 06:52:11,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-25 06:52:11,700] [main] testng.directory = /data [testng] [2024-11-25 06:52:11,700] [main] testng.configDirectory = /config [testng] [2024-11-25 06:52:11,712] [main] testng.multiplier = 1.0 [testng] [2024-11-25 06:52:11,713] [main] testng.in-memory = false [testng] [2024-11-25 06:52:11,713] [main] testng.allow-missing = false [testng] [2024-11-25 06:52:11,713] [main] user.language = fr [testng] [2024-11-25 06:52:11,713] [main] user.country = FR [testng] [2024-11-25 06:52:11,713] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-25 06:52:56,159] [main] ---------------------------------------- [testng] [2024-11-25 06:52:56,159] [main] Total files: 31 [testng] [2024-11-25 06:52:56,159] [main] Scan time: 44.446 s (1433 ms/file) [testng] [2024-11-25 06:52:56,159] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-25 06:53:46,383] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx: [testng] 06:53:46,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:53:46,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:46,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-25_06-53-46.log] [testng] 06:53:46,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102025df - End of configuration. [testng] [2024-11-25 06:53:47,861] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2: [testng] 06:53:47,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:53:47,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:47,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-25_06-53-47.log] [testng] 06:53:47,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2829d82f - End of configuration. [testng] [2024-11-25 06:53:49,093] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 06:53:49,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:53:49,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:49,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-25_06-53-49.log] [testng] 06:53:49,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7994a1 - End of configuration. [testng] [2024-11-25 06:53:50,564] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 06:53:50,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:53:50,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:50,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-25_06-53-50.log] [testng] 06:53:50,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334c1322 - End of configuration. [testng] [2024-11-25 06:53:52,219] [pool-1-thread-9] Initializing /data/kraig/head.jp2: [testng] 06:53:52,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:53:52,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:52,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-25_06-53-52.log] [testng] 06:53:52,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac97f51 - End of configuration. [testng] [2024-11-25 06:53:53,458] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 06:53:53,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:53:53,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:53,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-25_06-53-53.log] [testng] 06:53:53,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bf73ac8 - End of configuration. [testng] [2024-11-25 06:53:54,723] [pool-1-thread-7] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 06:53:54,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:53:54,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:54,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-25_06-53-54.log] [testng] 06:53:54,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ccf70a2 - End of configuration. [testng] [2024-11-25 06:53:56,019] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 06:53:56,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:53:56,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:56,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-25_06-53-56.log] [testng] 06:53:56,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5410fa0a - End of configuration. [testng] [2024-11-25 06:53:57,640] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] 06:53:57,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:53:57,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:57,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-25_06-53-57.log] [testng] 06:53:57,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21846273 - End of configuration. [testng] [2024-11-25 06:53:59,019] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 06:53:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:53:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:59,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-25_06-53-59.log] [testng] 06:53:59,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54fccc44 - End of configuration. [testng] [2024-11-25 06:54:00,224] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] 06:54:00,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:54:00,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:54:00,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-25_06-54-00.log] [testng] 06:54:00,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b3f0ee - End of configuration. [testng] [2024-11-25 06:54:01,464] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jpc: [testng] 06:54:01,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:54:01,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:54:01,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-25_06-54-01.log] [testng] 06:54:01,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c973156 - End of configuration. [testng] [2024-11-25 06:54:13,631] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-11-25 06:54:14,916] [pool-1-thread-3] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-11-25 06:54:15,240] [pool-1-thread-5] Initializing /data/david/cy5-tph.jp2: [testng] [2024-11-25 06:54:16,437] [pool-1-thread-8] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-11-25 06:54:17,700] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-11-25 06:54:20,947] [pool-1-thread-4] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-11-25 06:54:22,176] [pool-1-thread-1] Initializing /data/frans/flower.jp2: [testng] [2024-11-25 06:54:25,762] [pool-1-thread-10] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-11-25 06:54:27,375] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-11-25 06:54:30,852] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-11-25 06:54:34,460] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-11-25 06:54:41,716] [pool-1-thread-2] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-11-25 06:54:43,688] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-11-25 06:54:51,228] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-11-25 06:54:55,064] [pool-1-thread-10] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-11-25 06:55:01,780] [pool-1-thread-1] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-11-25 06:55:03,247] [pool-1-thread-7] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-11-25 06:55:05,737] [pool-1-thread-11] Initializing /data/vikram/Captured 3.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 50 seconds Finished: SUCCESS