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Started by upstream project "BIOFORMATS-test-repo" build number 268 originally caused by: Started by upstream project "Trigger" build number 291 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins17518459976043075608.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42280_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:18:45,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:18:45,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:18:45,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:18:45,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:18:45,870 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:18:45,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:18:45,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:18:45,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:18:45,872 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:18:45,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:18:45,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:18:45,873 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:18:46,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:18:46,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:18:46,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:18:46,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:18:46,080 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:18:46,080 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:18:46,080 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:18:46,081 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:18:46,081 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:18:46,081 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:18:46,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-26 00:18:46,091] [main] java.version = 11.0.16 [testng] 00:18:46,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:18:46,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:18:46,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-26_00-18-46.log] [testng] 00:18:46,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-26 00:18:46,140] [main] testng.directory = /data [testng] [2024-11-26 00:18:46,140] [main] testng.configDirectory = /config [testng] [2024-11-26 00:18:46,149] [main] testng.multiplier = 1.0 [testng] [2024-11-26 00:18:46,150] [main] testng.in-memory = false [testng] [2024-11-26 00:18:46,151] [main] testng.allow-missing = false [testng] [2024-11-26 00:18:46,151] [main] user.language = en [testng] [2024-11-26 00:18:46,151] [main] user.country = ${user.country} [testng] [2024-11-26 00:18:46,151] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-26 00:21:21,696] [main] ---------------------------------------- [testng] [2024-11-26 00:21:21,696] [main] Total files: 4426 [testng] [2024-11-26 00:21:21,696] [main] Scan time: 155.545 s (35 ms/file) [testng] [2024-11-26 00:21:21,696] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-26 02:23:22,681] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] 02:23:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:23:22,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:22,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-26_02-23-22.log] [testng] 02:23:22,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1feb1db0 - End of configuration. [testng] [2024-11-26 02:23:28,350] [pool-1-thread-12] Initializing /data/misc/wtembryo.tiff: [testng] 02:23:28,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:23:28,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:28,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-26_02-23-28.log] [testng] 02:23:28,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aa8b246 - End of configuration. [testng] [2024-11-26 02:23:33,520] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] 02:23:33,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:23:33,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:33,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-26_02-23-33.log] [testng] 02:23:33,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40500854 - End of configuration. [testng] [2024-11-26 02:23:38,275] [pool-1-thread-10] Initializing /data/brian/Alx-488-pk.tif: [testng] 02:23:38,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:23:38,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:38,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-26_02-23-38.log] [testng] 02:23:38,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8e10ac - End of configuration. [testng] [2024-11-26 02:23:45,193] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] 02:23:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:23:45,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:45,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-26_02-23-45.log] [testng] 02:23:45,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8c091 - End of configuration. [testng] [2024-11-26 02:23:51,023] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] 02:23:51,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:23:51,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:51,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-26_02-23-51.log] [testng] 02:23:51,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b9d3b22 - End of configuration. [testng] [2024-11-26 02:23:57,509] [pool-1-thread-7] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] 02:23:57,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:23:57,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:23:57,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-26_02-23-57.log] [testng] 02:23:57,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56db01a7 - End of configuration. [testng] [2024-11-26 02:24:04,200] [pool-1-thread-6] Initializing /data/public/libtiff/oxford.tif: [testng] 02:24:04,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:24:04,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:04,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-26_02-24-04.log] [testng] 02:24:04,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67f3f86c - End of configuration. [testng] [2024-11-26 02:24:11,122] [pool-1-thread-5] Initializing /data/brian/Ch1_fld1.tif: [testng] 02:24:11,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:24:11,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:11,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-26_02-24-11.log] [testng] 02:24:11,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57db57ff - End of configuration. [testng] [2024-11-26 02:24:15,428] [pool-1-thread-4] Initializing /data/josiah/cell-Z17.C0.tiff: [testng] 02:24:15,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:24:15,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:15,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-26_02-24-15.log] [testng] 02:24:15,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ad4fa00 - End of configuration. [testng] [2024-11-26 02:24:23,079] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 02:24:23,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:24:23,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:23,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-26_02-24-23.log] [testng] 02:24:23,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@217f6e82 - End of configuration. [testng] [2024-11-26 02:24:33,989] [pool-1-thread-2] Initializing /data/jae/first image.tif: [testng] 02:24:33,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:24:33,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:33,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-26_02-24-33.log] [testng] 02:24:33,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@623bede3 - End of configuration. [testng] [2024-11-26 02:25:33,850] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-11-26 02:25:40,877] [pool-1-thread-9] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-11-26 02:25:46,969] [pool-1-thread-12] Initializing /data/josiah/cell-Z20.C0.tiff: [testng] [2024-11-26 02:25:53,197] [pool-1-thread-3] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-11-26 02:25:58,102] [pool-1-thread-4] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-11-26 02:26:03,002] [pool-1-thread-10] Initializing /data/big-images/2kx2k.tif: [testng] [2024-11-26 02:26:09,103] [pool-1-thread-8] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-11-26 02:26:14,308] [pool-1-thread-6] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-11-26 02:26:19,430] [pool-1-thread-1] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2024-11-26 02:26:24,008] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-11-26 02:26:27,034] [pool-1-thread-7] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-11-26 02:26:36,445] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z041.tif: [testng] [2024-11-26 02:27:08,274] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-11-26 02:27:17,303] [pool-1-thread-11] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-11-26 02:27:25,124] [pool-1-thread-7] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-11-26 02:27:33,597] [pool-1-thread-8] Initializing /data/unknown/epsImgColony.tif: [testng] [2024-11-26 02:27:40,404] [pool-1-thread-10] Initializing /data/wayne/mBoeglin_lzw/mm_7.1.2.0.tif: [testng] [2024-11-26 02:27:42,567] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-11-26 02:27:49,900] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-11-26 02:27:56,542] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0232.TIF: [testng] [2024-11-26 02:28:01,201] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-11-26 02:28:06,971] [pool-1-thread-4] Initializing /data/josiah/cell-Z36.C0.tiff: [testng] [2024-11-26 02:28:11,926] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x64.tiff: [testng] [2024-11-26 02:28:17,796] [pool-1-thread-5] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-11-26 02:28:55,423] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-11-26 02:29:02,118] [pool-1-thread-11] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-11-26 02:29:09,392] [pool-1-thread-4] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-11-26 02:29:16,822] [pool-1-thread-7] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-11-26 02:29:22,534] [pool-1-thread-1] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2024-11-26 02:29:28,666] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-11-26 02:29:33,792] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-11-26 02:29:41,423] [pool-1-thread-10] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-11-26 02:29:49,896] [pool-1-thread-9] Initializing /data/tamjid/Image_843.tif: [testng] [2024-11-26 02:30:00,009] [pool-1-thread-8] Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-11-26 02:30:09,128] [pool-1-thread-3] Initializing /data/public/condensation/B12.pattern2.tif: [testng] [2024-11-26 02:30:18,272] [pool-1-thread-5] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-11-26 02:31:08,231] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-11-26 02:31:15,837] [pool-1-thread-11] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-11-26 02:31:32,266] [pool-1-thread-7] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-11-26 02:31:40,812] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-11-26 02:31:50,394] [pool-1-thread-10] Initializing /data/qa-17411/_t20271.tif: [testng] [2024-11-26 02:31:58,318] [pool-1-thread-3] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-11-26 02:32:05,075] [pool-1-thread-4] Initializing /data/damian/36m.tiff: [testng] [2024-11-26 02:32:12,691] [pool-1-thread-5] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-11-26 02:32:20,697] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-11-26 02:32:29,205] [pool-1-thread-12] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-11-26 02:32:36,210] [pool-1-thread-1] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] [2024-11-26 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Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-11-26 04:53:58,269] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z061.tif: [testng] [2024-11-26 04:54:09,312] [pool-1-thread-2] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-11-26 04:54:19,586] [pool-1-thread-3] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-11-26 04:54:32,436] [pool-1-thread-1] Initializing /data/jayne/Zst_47/WTZER_Series47_z000_ch00.tif: [testng] [2024-11-26 04:54:49,226] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z032.tif: [testng] [2024-11-26 04:55:00,748] [pool-1-thread-9] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-11-26 04:55:29,943] [pool-1-thread-6] Initializing /data/stephane/test sortie_t0000_z0000.tif: [testng] [2024-11-26 04:55:40,821] [pool-1-thread-7] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-11-26 04:56:01,247] [pool-1-thread-11] Initializing 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[testng] [2024-11-26 04:58:31,659] [pool-1-thread-7] Initializing /data/josh/NESa_C2_TP1.tiff: [testng] [2024-11-26 04:58:43,777] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2024-11-26 04:59:24,887] [pool-1-thread-10] Initializing /data/josh/stack.tif: [testng] [2024-11-26 04:59:35,629] [pool-1-thread-8] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-11-26 04:59:48,780] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z035.tif: [testng] [2024-11-26 04:59:58,328] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-11-26 05:00:10,155] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-11-26 05:00:21,343] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-11-26 05:00:33,396] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z045.tif: [testng] [2024-11-26 05:00:45,105] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-11-26 05:00:56,403] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-11-26 05:01:33,623] [pool-1-thread-11] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-11-26 05:01:44,747] [pool-1-thread-7] Initializing /data/stephane/Fluid Dynamics.tif: [testng] [2024-11-26 05:02:08,006] [pool-1-thread-2] Initializing /data/josiah/cell-Z13.C1.tiff: [testng] [2024-11-26 05:02:16,167] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-11-26 05:02:25,083] [pool-1-thread-3] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] [2024-11-26 05:02:34,985] [pool-1-thread-4] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-11-26 05:03:22,420] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-11-26 05:03:33,556] [pool-1-thread-12] Initializing /data/qa-4017/Artificial_xyt_8bit.tif: [testng] [2024-11-26 05:03:44,748] [pool-1-thread-6] Initializing /data/ascb/CYT-57_HowellClatharinDetails_4800.tif: [testng] [2024-11-26 05:03:57,017] [pool-1-thread-5] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-11-26 05:04:07,389] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-11-26 05:04:35,679] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-11-26 05:04:46,462] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-11-26 05:04:59,339] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-11-26 05:05:10,721] [pool-1-thread-3] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-11-26 05:05:21,900] [pool-1-thread-10] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-11-26 05:05:31,943] [pool-1-thread-2] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-11-26 05:05:40,852] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x32.tiff: [testng] [2024-11-26 05:05:49,668] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x32.tiff: [testng] [2024-11-26 05:05:58,295] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0236.TIF: [testng] [2024-11-26 05:06:08,031] [pool-1-thread-5] Initializing /data/josiah/cell-Z22.C1.tiff: [testng] [2024-11-26 05:06:45,427] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z006.tif: [testng] [2024-11-26 05:07:07,100] [pool-1-thread-7] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-11-26 05:07:19,500] [pool-1-thread-1] Initializing /data/josiah/cell-Z0.C0.tiff: [testng] [2024-11-26 05:07:33,928] [pool-1-thread-3] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-11-26 05:07:43,966] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z026.tif: [testng] [2024-11-26 05:07:56,297] [pool-1-thread-8] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-11-26 05:08:07,105] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-11-26 05:08:19,801] [pool-1-thread-9] Initializing /data/damian/damian.tif: [testng] [2024-11-26 05:08:32,640] [pool-1-thread-2] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-11-26 05:08:44,059] [pool-1-thread-5] Initializing /data/ascb/FND-24_GeorgeEPalade.tif: [testng] [2024-11-26 05:08:52,977] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-11-26 05:09:32,173] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-11-26 05:09:59,573] [pool-1-thread-1] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-11-26 05:10:09,064] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-11-26 05:10:20,302] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-11-26 05:10:33,166] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-11-26 05:10:47,835] [pool-1-thread-12] Initializing /data/brian/datamanager.tiff: [testng] [2024-11-26 05:11:01,648] [pool-1-thread-5] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-11-26 05:11:13,764] [pool-1-thread-9] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-11-26 05:11:22,385] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z051.tif: [testng] 05:12:47,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:12:47,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:12:47,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-26_05-12-47.log] [testng] 05:12:47,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60781e90 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 294 minutes 5 seconds Finished: SUCCESS