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Started by upstream project "BIOFORMATS-test-repo" build number 268 originally caused by: Started by upstream project "Trigger" build number 291 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8495396224055557503.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42363_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 09:59:09,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:59:09,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 09:59:09,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:59:09,559 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:59:09,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:59:09,560 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:59:09,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:59:09,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:59:09,560 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:59:09,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:59:09,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:59:09,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:59:09,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:59:09,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:59:09,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:59:09,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:59:09,753 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:59:09,753 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:59:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:59:09,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:59:09,754 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 09:59:09,755 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 09:59:09,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-26 09:59:09,763] [main] java.version = 11.0.16 [testng] 09:59:09,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:59:09,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:09,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-26_09-59-09.log] [testng] 09:59:09,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-26 09:59:09,814] [main] testng.directory = /data [testng] [2024-11-26 09:59:09,814] [main] testng.configDirectory = /config [testng] [2024-11-26 09:59:09,826] [main] testng.multiplier = 1.0 [testng] [2024-11-26 09:59:09,832] [main] testng.in-memory = false [testng] [2024-11-26 09:59:09,833] [main] testng.allow-missing = false [testng] [2024-11-26 09:59:09,833] [main] user.language = en [testng] [2024-11-26 09:59:09,833] [main] user.country = ${user.country} [testng] [2024-11-26 09:59:09,833] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-26 09:59:10,283] [main] ---------------------------------------- [testng] [2024-11-26 09:59:10,284] [main] Total files: 19 [testng] [2024-11-26 09:59:10,284] [main] Scan time: 0.45 s (23 ms/file) [testng] [2024-11-26 09:59:10,284] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-26 09:59:27,537] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 09:59:27,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:59:27,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:27,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-26_09-59-27.log] [testng] 09:59:27,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35851691 - End of configuration. [testng] [2024-11-26 09:59:28,299] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 09:59:28,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:59:28,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:28,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-26_09-59-28.log] [testng] 09:59:28,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe97e56 - End of configuration. [testng] [2024-11-26 09:59:29,145] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW: [testng] 09:59:29,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:59:29,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:29,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-26_09-59-29.log] [testng] 09:59:29,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50c4986c - End of configuration. [testng] [2024-11-26 09:59:29,966] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 09:59:29,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:59:29,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:29,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-26_09-59-29.log] [testng] 09:59:29,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5300cb8d - End of configuration. [testng] [2024-11-26 09:59:30,787] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW: [testng] 09:59:30,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:59:30,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:30,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-26_09-59-30.log] [testng] 09:59:30,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration. [testng] [2024-11-26 09:59:31,585] [pool-1-thread-8] Initializing /data/samples/100R PICT0001.MRW: [testng] 09:59:31,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:59:31,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:31,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-26_09-59-31.log] [testng] 09:59:31,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@265ccd0d - End of configuration. [testng] [2024-11-26 09:59:32,366] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 09:59:32,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:59:32,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:32,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-26_09-59-32.log] [testng] 09:59:32,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1518b35b - End of configuration. [testng] [2024-11-26 09:59:33,123] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 09:59:33,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:59:33,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:33,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-26_09-59-33.log] [testng] 09:59:33,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@760a5ccb - End of configuration. [testng] [2024-11-26 09:59:33,938] [pool-1-thread-5] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 09:59:33,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:59:33,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:33,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-26_09-59-33.log] [testng] 09:59:33,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@142833ef - End of configuration. [testng] [2024-11-26 09:59:34,739] [pool-1-thread-4] Initializing /data/samples/200R PICT0002.MRW: [testng] 09:59:34,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:59:34,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:34,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-26_09-59-34.log] [testng] 09:59:34,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d78af2 - End of configuration. [testng] [2024-11-26 09:59:35,527] [pool-1-thread-3] Initializing /data/samples/400R PICT0003.MRW: [testng] 09:59:35,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:59:35,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:35,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-26_09-59-35.log] [testng] 09:59:35,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a89bd66 - End of configuration. [testng] [2024-11-26 09:59:36,212] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 09:59:36,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:59:36,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:59:36,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-26_09-59-36.log] [testng] 09:59:36,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f805497 - End of configuration. [testng] [2024-11-26 09:59:51,833] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-11-26 09:59:52,986] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-11-26 09:59:54,056] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-11-26 09:59:55,117] [pool-1-thread-4] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2024-11-26 09:59:56,128] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-11-26 09:59:57,182] [pool-1-thread-2] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] [2024-11-26 09:59:58,161] [pool-1-thread-10] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 1 second Finished: SUCCESS