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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins642570968798072937.sh + '[' targa = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42470_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:40:21,037 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:40:21,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:40:21,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:40:21,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:40:21,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:40:21,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:40:21,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:40:21,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:40:21,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:40:21,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:40:21,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:40:21,042 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:40:21,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:40:21,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:40:21,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:40:21,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:40:21,250 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:40:21,250 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:40:21,250 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:40:21,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:40:21,251 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:40:21,252 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:40:21,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 00:40:21,261] [main] java.version = 17.0.2 [testng] 00:40:21,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:40:21,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:21,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-40-21.log] [testng] 00:40:21,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 00:40:21,311] [main] testng.directory = /data [testng] [2024-11-27 00:40:21,312] [main] testng.configDirectory = /config [testng] [2024-11-27 00:40:21,321] [main] testng.multiplier = 1.0 [testng] [2024-11-27 00:40:21,321] [main] testng.in-memory = false [testng] [2024-11-27 00:40:21,322] [main] testng.allow-missing = false [testng] [2024-11-27 00:40:21,322] [main] user.language = en [testng] [2024-11-27 00:40:21,322] [main] user.country = ${user.country} [testng] [2024-11-27 00:40:21,322] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 00:40:21,753] [main] ---------------------------------------- [testng] [2024-11-27 00:40:21,753] [main] Total files: 21 [testng] [2024-11-27 00:40:21,753] [main] Scan time: 0.431 s (20 ms/file) [testng] [2024-11-27 00:40:21,753] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 00:40:25,693] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] 00:40:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:40:25,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:25,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-40-25.log] [testng] 00:40:25,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5848ef26 - End of configuration. [testng] [2024-11-27 00:40:25,904] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:40:25,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:40:25,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:25,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-40-25.log] [testng] 00:40:25,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3220fad3 - End of configuration. [testng] [2024-11-27 00:40:26,141] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 00:40:26,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:40:26,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:26,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-40-26.log] [testng] 00:40:26,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a20a692 - End of configuration. [testng] [2024-11-27 00:40:26,393] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:40:26,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:40:26,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:26,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-40-26.log] [testng] 00:40:26,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35a87787 - End of configuration. [testng] [2024-11-27 00:40:26,632] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 00:40:26,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:40:26,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:26,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-40-26.log] [testng] 00:40:26,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a29d39 - End of configuration. [testng] [2024-11-27 00:40:26,877] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA: [testng] 00:40:26,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:40:26,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:26,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-40-26.log] [testng] 00:40:26,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71162a61 - End of configuration. [testng] [2024-11-27 00:40:27,052] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 00:40:27,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:40:27,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:27,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-40-27.log] [testng] 00:40:27,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ae4693 - End of configuration. [testng] [2024-11-27 00:40:27,245] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] 00:40:27,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:40:27,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:27,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-40-27.log] [testng] 00:40:27,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b9e3b - End of configuration. [testng] [2024-11-27 00:40:27,427] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] 00:40:27,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:40:27,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:27,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-40-27.log] [testng] 00:40:27,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295a7e88 - End of configuration. [testng] [2024-11-27 00:40:27,617] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA: [testng] 00:40:27,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:40:27,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:27,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-40-27.log] [testng] 00:40:27,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac61b6d - End of configuration. [testng] [2024-11-27 00:40:27,823] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:40:27,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:40:27,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:27,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-40-27.log] [testng] 00:40:27,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15030baa - End of configuration. [testng] [2024-11-27 00:40:28,031] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:40:28,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:40:28,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:28,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-40-28.log] [testng] 00:40:28,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4635a024 - End of configuration. [testng] [2024-11-27 00:40:32,155] [pool-1-thread-1] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-27 00:40:32,426] [pool-1-thread-5] Initializing /data/samples/CTC16.TGA: [testng] [2024-11-27 00:40:32,706] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-11-27 00:40:33,019] [pool-1-thread-9] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-11-27 00:40:33,303] [pool-1-thread-12] Initializing /data/samples/UTC16.TGA: [testng] [2024-11-27 00:40:33,600] [pool-1-thread-3] Initializing /data/samples/XING_B24.TGA: [testng] [2024-11-27 00:40:33,874] [pool-1-thread-7] Initializing /data/samples/MARBLES.TGA: [testng] [2024-11-27 00:40:34,125] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] [2024-11-27 00:40:34,344] [pool-1-thread-2] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS