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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins17745244838986013479.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42474_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:47:42,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:47:42,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:47:42,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:42,338 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:42,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:47:42,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:47:42,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:47:42,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:42,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:42,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:47:42,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:47:42,340 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:47:42,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:47:42,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:47:42,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:47:42,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:47:42,531 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:47:42,532 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:47:42,532 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:47:42,532 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:47:42,532 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:47:42,533 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:47:42,533 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 00:47:42,542] [main] java.version = 17.0.2 [testng] 00:47:42,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:47:42,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:42,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-47-42.log] [testng] 00:47:42,587 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 00:47:42,589] [main] testng.directory = /data [testng] [2024-11-27 00:47:42,590] [main] testng.configDirectory = /config [testng] [2024-11-27 00:47:42,598] [main] testng.multiplier = 1.0 [testng] [2024-11-27 00:47:42,599] [main] testng.in-memory = false [testng] [2024-11-27 00:47:42,599] [main] testng.allow-missing = false [testng] [2024-11-27 00:47:42,599] [main] user.language = en [testng] [2024-11-27 00:47:42,599] [main] user.country = ${user.country} [testng] [2024-11-27 00:47:42,599] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 00:48:09,609] [main] ---------------------------------------- [testng] [2024-11-27 00:48:09,609] [main] Total files: 259 [testng] [2024-11-27 00:48:09,610] [main] Scan time: 27.01 s (104 ms/file) [testng] [2024-11-27 00:48:09,610] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 00:55:14,883] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:55:14,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:55:14,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:14,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-55-14.log] [testng] 00:55:14,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20455cf0 - End of configuration. [testng] [2024-11-27 00:55:32,850] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:55:32,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:55:32,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:32,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-55-32.log] [testng] 00:55:32,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d85f67 - End of configuration. [testng] [2024-11-27 00:55:33,391] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:55:33,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:55:33,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:33,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-55-33.log] [testng] 00:55:33,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f390755 - End of configuration. [testng] [2024-11-27 00:55:34,600] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:55:34,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:55:34,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:34,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-55-34.log] [testng] 00:55:34,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a97571 - End of configuration. [testng] [2024-11-27 00:55:35,481] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:55:35,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:55:35,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:35,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-55-35.log] [testng] 00:55:35,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62389fb6 - End of configuration. [testng] [2024-11-27 00:55:35,691] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:55:35,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:55:35,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:35,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-55-35.log] [testng] 00:55:35,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763c82e3 - End of configuration. [testng] [2024-11-27 00:55:36,096] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:55:36,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:55:36,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:36,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-55-36.log] [testng] 00:55:36,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b74f060 - End of configuration. [testng] [2024-11-27 00:55:36,694] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:55:36,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:55:36,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:36,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-55-36.log] [testng] 00:55:36,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145c1f58 - End of configuration. [testng] [2024-11-27 00:55:37,571] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:55:37,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:55:37,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:37,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-55-37.log] [testng] 00:55:37,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604c69e - End of configuration. [testng] [2024-11-27 00:55:38,248] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:55:38,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:55:38,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:38,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-55-38.log] [testng] 00:55:38,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@168b0460 - End of configuration. [testng] [2024-11-27 00:55:38,888] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:55:38,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:55:38,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:38,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-55-38.log] [testng] 00:55:38,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d2a43a - End of configuration. [testng] [2024-11-27 00:55:42,394] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:55:42,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:55:42,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:55:42,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-55-42.log] [testng] 00:55:42,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44191698 - End of configuration. [testng] [2024-11-27 00:55:47,101] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-27 00:55:47,753] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-27 00:55:57,844] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-27 00:55:58,435] [pool-1-thread-4] Initializing /data/marc/V0606L.oib: [testng] [2024-11-27 00:56:00,460] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-27 00:56:02,174] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-27 00:56:05,407] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-27 00:56:06,943] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-27 00:56:09,957] [pool-1-thread-6] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-27 00:56:14,289] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-27 00:56:16,887] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-27 00:56:18,892] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-11-27 00:56:21,140] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-11-27 00:56:23,391] [pool-1-thread-4] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-27 00:56:25,728] [pool-1-thread-11] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-27 00:56:26,237] [pool-1-thread-9] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-27 00:56:32,384] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-27 00:56:43,168] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-27 00:56:44,752] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-27 00:56:49,003] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-27 00:56:50,052] [pool-1-thread-2] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-27 00:56:54,818] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2024-11-27 00:56:55,960] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-27 00:56:59,173] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-27 00:57:01,139] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-27 00:57:03,331] [pool-1-thread-4] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-27 00:57:04,014] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-27 00:57:09,886] [pool-1-thread-11] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-27 00:57:14,257] [pool-1-thread-8] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-27 00:57:16,347] [pool-1-thread-4] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-27 00:57:17,334] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-27 00:57:20,744] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-27 00:57:22,000] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-27 00:57:23,517] [pool-1-thread-4] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-27 00:57:26,146] [pool-1-thread-8] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-27 00:57:47,686] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-27 00:57:50,637] [pool-1-thread-11] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-27 00:58:09,436] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-27 00:58:15,603] [pool-1-thread-5] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-27 00:58:48,948] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-27 00:59:04,164] [pool-1-thread-4] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-27 00:59:09,672] [pool-1-thread-4] Initializing /data/david/Image0016.oib: [testng] [2024-11-27 00:59:13,958] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-27 01:00:02,053] [pool-1-thread-4] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-27 01:00:06,636] [pool-1-thread-4] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-27 01:00:35,144] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-27 01:00:41,470] [pool-1-thread-4] Initializing /data/jae/Image0001.oib: [testng] [2024-11-27 01:00:49,255] [pool-1-thread-4] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-27 01:00:57,055] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-27 01:01:32,391] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-27 01:01:36,565] [pool-1-thread-4] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-27 01:01:38,096] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-27 01:01:44,239] [pool-1-thread-4] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-27 01:01:47,454] [pool-1-thread-4] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-27 01:04:11,836] [pool-1-thread-6] Initializing /data/johannes/step4.bmp: [testng] [2024-11-27 01:04:14,159] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-27 01:04:18,105] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-27 01:04:27,454] [pool-1-thread-6] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-27 01:04:30,449] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-27 01:04:48,284] [pool-1-thread-6] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-27 01:05:01,285] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-27 01:09:44,780] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-11-27 01:09:53,169] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-27 01:10:01,545] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-27 01:11:31,102] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-27 01:11:38,804] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-27 01:13:30,057] [pool-1-thread-9] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-27 01:13:40,604] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-27 01:13:48,695] [pool-1-thread-9] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-27 01:13:58,890] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-27 01:14:06,366] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-27 01:14:20,515] [pool-1-thread-9] Initializing /data/glen/111407.oif: [testng] [2024-11-27 01:16:12,498] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-27 01:16:22,398] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-27 01:16:31,523] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-27 01:22:25,597] [pool-1-thread-5] Initializing /data/monica/Image0056.oif: [testng] [2024-11-27 01:23:46,686] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-27 01:23:54,906] [pool-1-thread-5] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-27 01:24:02,828] [pool-1-thread-5] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-27 01:24:11,074] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-27 01:24:19,031] [pool-1-thread-5] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-27 01:27:03,539] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-27 01:27:22,769] [pool-1-thread-3] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-27 01:27:33,973] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-27 01:27:54,673] [pool-1-thread-3] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-27 01:28:13,047] [pool-1-thread-11] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-27 01:28:20,998] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-27 01:28:47,571] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-27 01:28:49,647] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-27 01:28:58,935] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-27 01:29:07,910] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-27 01:29:52,052] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-11-27 01:31:07,791] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-27 01:31:11,006] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-27 01:31:21,256] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-27 01:31:31,440] [pool-1-thread-5] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-27 01:31:40,036] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-27 01:31:47,637] [pool-1-thread-5] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-27 01:31:55,907] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-11-27 01:32:02,027] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-11-27 01:32:11,090] [pool-1-thread-5] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-27 01:32:22,556] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-11-27 01:32:26,550] [pool-1-thread-5] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-27 01:32:55,110] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-27 01:33:02,395] [pool-1-thread-11] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-27 01:33:42,985] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-27 01:33:50,934] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-27 01:33:57,018] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-27 01:34:06,138] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-27 01:34:20,663] [pool-1-thread-12] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-27 01:34:23,528] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-27 01:35:28,736] [pool-1-thread-8] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-27 01:35:40,888] [pool-1-thread-8] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-27 01:36:12,091] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-27 01:36:20,864] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2024-11-27 01:36:27,316] [pool-1-thread-12] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-27 01:38:23,815] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-27 01:38:30,925] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-11-27 01:38:34,214] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-27 01:38:42,474] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-27 01:38:51,534] [pool-1-thread-9] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-27 01:38:58,874] [pool-1-thread-9] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-27 01:41:29,951] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-27 01:41:39,826] [pool-1-thread-6] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-27 01:42:36,630] [pool-1-thread-10] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-27 01:42:44,653] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-27 01:43:32,138] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-27 01:43:43,200] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-27 01:53:23,453] [pool-1-thread-6] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-27 01:53:29,325] [pool-1-thread-6] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-27 01:53:37,304] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-27 01:53:44,980] [pool-1-thread-6] Initializing /data/johannes/step2.bmp: [testng] 02:12:09,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:12:09,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:12:09,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_02-12-09.log] [testng] 02:12:09,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50fdbf87 - End of configuration. [testng] 02:47:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:47:45,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:45,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_02-47-45.log] [testng] 02:47:45,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ab1d628 - End of configuration. [testng] 03:22:52,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:22:52,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:22:52,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_03-22-52.log] [testng] 03:22:52,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d2146d2 - End of configuration. [testng] 03:31:09,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:31:09,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:31:09,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_03-31-09.log] [testng] 03:31:09,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 163 minutes 31 seconds Finished: SUCCESS