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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11958082834142864043.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42490_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:02:19,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:02:19,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:02:19,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:02:19,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:02:19,061 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:02:19,062 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:02:19,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:02:19,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:02:19,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:02:19,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:02:19,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:02:19,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:02:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:02:19,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:02:19,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:02:19,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:02:19,246 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:02:19,246 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:02:19,246 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:02:19,247 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:02:19,247 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:02:19,248 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:02:19,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 01:02:19,256] [main] java.version = 17.0.2 [testng] 01:02:19,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:02:19,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:02:19,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_01-02-19.log] [testng] 01:02:19,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 01:02:19,302] [main] testng.directory = /data [testng] [2024-11-27 01:02:19,302] [main] testng.configDirectory = /config [testng] [2024-11-27 01:02:19,311] [main] testng.multiplier = 1.0 [testng] [2024-11-27 01:02:19,311] [main] testng.in-memory = false [testng] [2024-11-27 01:02:19,311] [main] testng.allow-missing = false [testng] [2024-11-27 01:02:19,311] [main] user.language = en [testng] [2024-11-27 01:02:19,311] [main] user.country = ${user.country} [testng] [2024-11-27 01:02:19,312] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 01:06:01,472] [main] ---------------------------------------- [testng] [2024-11-27 01:06:01,472] [main] Total files: 275 [testng] [2024-11-27 01:06:01,473] [main] Scan time: 222.16 s (807 ms/file) [testng] [2024-11-27 01:06:01,473] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 01:20:15,389] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 01:20:15,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:15,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:15,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_01-20-15.log] [testng] 01:20:15,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d0d60d2 - End of configuration. [testng] [2024-11-27 01:20:20,705] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 01:20:20,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:20,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:20,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_01-20-20.log] [testng] 01:20:20,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783904c5 - End of configuration. [testng] [2024-11-27 01:20:22,114] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 01:20:22,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:22,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:22,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_01-20-22.log] [testng] 01:20:22,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50170ffe - End of configuration. [testng] [2024-11-27 01:20:23,331] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 01:20:23,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:23,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:23,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_01-20-23.log] [testng] 01:20:23,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@318afe35 - End of configuration. [testng] [2024-11-27 01:20:25,718] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 01:20:25,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:25,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:25,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_01-20-25.log] [testng] 01:20:25,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2fcc1c - End of configuration. [testng] [2024-11-27 01:20:27,040] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 01:20:27,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:27,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:27,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_01-20-27.log] [testng] 01:20:27,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39bea123 - End of configuration. [testng] [2024-11-27 01:20:28,455] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 01:20:28,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:28,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:28,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_01-20-28.log] [testng] 01:20:28,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c22929 - End of configuration. [testng] [2024-11-27 01:20:29,852] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 01:20:29,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:29,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:29,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_01-20-29.log] [testng] 01:20:29,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ed7d29 - End of configuration. [testng] [2024-11-27 01:20:32,886] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 01:20:32,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:32,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:32,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_01-20-32.log] [testng] 01:20:32,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f465136 - End of configuration. [testng] [2024-11-27 01:20:34,407] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 01:20:34,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:34,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:34,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_01-20-34.log] [testng] 01:20:34,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a264ecd - End of configuration. [testng] [2024-11-27 01:20:36,704] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 01:20:36,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:36,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:36,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_01-20-36.log] [testng] 01:20:36,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d98041d - End of configuration. [testng] [2024-11-27 01:20:40,493] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 01:20:40,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:40,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:40,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_01-20-40.log] [testng] 01:20:40,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c0c5092 - End of configuration. [testng] [2024-11-27 01:20:56,950] [pool-1-thread-3] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-11-27 01:20:58,519] [pool-1-thread-9] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-11-27 01:20:59,866] [pool-1-thread-12] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-11-27 01:21:01,118] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-11-27 01:21:02,406] [pool-1-thread-6] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-11-27 01:21:03,720] [pool-1-thread-5] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-11-27 01:21:05,050] [pool-1-thread-8] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-11-27 01:21:08,294] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-11-27 01:21:13,424] [pool-1-thread-1] Initializing /data/brian/MDCK002.nd2: [testng] [2024-11-27 01:21:14,889] [pool-1-thread-7] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-11-27 01:21:20,533] [pool-1-thread-12] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-11-27 01:21:24,270] [pool-1-thread-2] Initializing /data/david/NDSequence013.nd2: [testng] [2024-11-27 01:21:25,803] [pool-1-thread-11] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-11-27 01:21:28,111] [pool-1-thread-6] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-11-27 01:21:30,622] [pool-1-thread-5] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-11-27 01:21:32,705] [pool-1-thread-4] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-11-27 01:21:34,790] [pool-1-thread-3] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-11-27 01:21:36,364] [pool-1-thread-9] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-11-27 01:21:37,858] [pool-1-thread-8] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-11-27 01:21:44,204] [pool-1-thread-1] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-11-27 01:21:46,079] [pool-1-thread-10] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-11-27 01:21:47,918] [pool-1-thread-7] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-11-27 01:21:49,266] [pool-1-thread-12] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-11-27 01:21:50,537] [pool-1-thread-5] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-11-27 01:21:54,404] [pool-1-thread-11] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-11-27 01:21:55,668] [pool-1-thread-6] Initializing /data/dan/120109_test.nd2: [testng] [2024-11-27 01:21:57,096] [pool-1-thread-2] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-11-27 01:21:58,229] [pool-1-thread-4] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-11-27 01:21:59,425] [pool-1-thread-9] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-11-27 01:22:00,663] [pool-1-thread-3] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-11-27 01:22:04,062] [pool-1-thread-5] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-11-27 01:22:06,332] [pool-1-thread-12] Initializing /data/chris/228 and 340.nd2: [testng] [2024-11-27 01:22:07,726] [pool-1-thread-7] Initializing /data/matt/Final merge.nd2: [testng] [2024-11-27 01:22:09,085] [pool-1-thread-10] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-11-27 01:22:13,322] [pool-1-thread-2] Initializing /data/josh/072007h.nd2: [testng] [2024-11-27 01:22:14,528] [pool-1-thread-9] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-11-27 01:22:15,650] [pool-1-thread-4] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-11-27 01:22:19,062] [pool-1-thread-6] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-11-27 01:22:21,538] [pool-1-thread-3] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-11-27 01:22:26,025] [pool-1-thread-5] Initializing /data/kevin/test3.nd2: [testng] [2024-11-27 01:22:33,075] [pool-1-thread-7] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-11-27 01:22:40,431] [pool-1-thread-10] Initializing /data/fiji-655/01.nd2: [testng] [2024-11-27 01:22:41,853] [pool-1-thread-8] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-11-27 01:22:42,966] [pool-1-thread-12] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-11-27 01:22:44,101] [pool-1-thread-5] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-11-27 01:22:45,074] [pool-1-thread-2] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-11-27 01:22:49,586] [pool-1-thread-9] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-11-27 01:22:54,559] [pool-1-thread-5] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-11-27 01:22:55,690] [pool-1-thread-8] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-11-27 01:22:57,083] [pool-1-thread-12] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-11-27 01:22:58,570] [pool-1-thread-10] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-11-27 01:23:03,169] [pool-1-thread-11] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-11-27 01:23:07,717] [pool-1-thread-1] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-11-27 01:23:14,493] [pool-1-thread-9] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-11-27 01:23:16,926] [pool-1-thread-5] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-11-27 01:23:18,617] [pool-1-thread-12] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-11-27 01:23:21,440] [pool-1-thread-8] Initializing /data/qa-7906/2591A.jp2: [testng] [2024-11-27 01:23:23,420] [pool-1-thread-2] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] [2024-11-27 01:23:24,836] [pool-1-thread-6] Initializing /data/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2024-11-27 01:23:26,114] [pool-1-thread-10] Initializing /data/rehan/P128.nd2: [testng] [2024-11-27 01:23:37,215] [pool-1-thread-2] Initializing /data/gh-2955/cluster.nd2: [testng] [2024-11-27 01:23:38,610] [pool-1-thread-6] Initializing /data/nadya/Capture1.PNG: [testng] [2024-11-27 01:23:41,345] [pool-1-thread-6] Initializing /data/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2024-11-27 01:23:53,233] [pool-1-thread-12] Initializing /data/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2024-11-27 01:24:09,214] [pool-1-thread-9] Initializing /data/public/jonas/2.nd2: [testng] [2024-11-27 01:24:13,083] [pool-1-thread-10] Initializing 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01:25:56,168] [pool-1-thread-10] Initializing /data/michael/opened skewed - C=2.tif: [testng] [2024-11-27 01:26:00,449] [pool-1-thread-4] Initializing /data/venu/N202-5 20x2.nd2: [testng] [2024-11-27 01:26:08,836] [pool-1-thread-9] Initializing /data/qa-17785/spc2493.nd2: [testng] [2024-11-27 01:26:10,559] [pool-1-thread-8] Initializing /data/benjamin/B2.nd2: [testng] [2024-11-27 01:26:13,196] [pool-1-thread-1] Initializing /data/pierre/G.nd2: [testng] [2024-11-27 01:26:15,852] [pool-1-thread-5] Initializing /data/qa-10380/271120.nd2: [testng] [2024-11-27 01:26:17,383] [pool-1-thread-4] Initializing /data/qa-4969/image.nd2: [testng] [2024-11-27 01:26:20,493] [pool-1-thread-7] Initializing /data/liang/1x4 good.nd2: [testng] [2024-11-27 01:26:26,294] [pool-1-thread-10] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001_CropCyan.nd2: [testng] [2024-11-27 01:26:29,215] [pool-1-thread-9] Initializing /data/richard/Nf1#49-#54.nd2: [testng] [2024-11-27 01:26:36,634] [pool-1-thread-3] Initializing /data/qa-7535/RNAi_CLC-1_010_kymo1.nd2: [testng] [2024-11-27 01:26:38,470] [pool-1-thread-6] Initializing /data/chris/MIX 1 FITC 200MS.nd2: [testng] [2024-11-27 01:26:40,084] [pool-1-thread-1] Initializing /data/venu/nd-three_channel-5.nd2: [testng] [2024-11-27 01:26:41,588] [pool-1-thread-4] Initializing /data/venu/nd-three_channel-1.nd2: [testng] [2024-11-27 01:26:43,367] [pool-1-thread-5] Initializing /data/qa-7906/2591B.jp2: [testng] [2024-11-27 01:26:50,058] [pool-1-thread-10] Initializing /data/helene/new_version_problem.nd2: [testng] [2024-11-27 01:26:52,876] [pool-1-thread-7] Initializing /data/guillaume/clones082908.nd2: [testng] [2024-11-27 01:26:55,008] [pool-1-thread-8] Initializing /data/richard/15ug.nd2: [testng] [2024-11-27 01:26:56,780] [pool-1-thread-3] Initializing /data/michael/50um_001 correct.nd2: [testng] [2024-11-27 01:26:58,633] [pool-1-thread-6] Initializing /data/qa-4206/1b-1.nd2: [testng] [2024-11-27 01:27:01,298] [pool-1-thread-4] Initializing 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Initializing /data/public/aryeh/MeOh_high_fluo_003.nd2: [testng] [2024-11-27 01:27:31,064] [pool-1-thread-8] Initializing /data/venu/N202-7 20x.nd2: [testng] [2024-11-27 01:27:36,993] [pool-1-thread-3] Initializing /data/guillaume/Lig_drugs051607.nd2: [testng] [2024-11-27 01:27:41,548] [pool-1-thread-5] Initializing /data/gh-3838/small_test.nd2: [testng] [2024-11-27 01:27:44,213] [pool-1-thread-9] Initializing /data/qa-4305/22492726_Figure 5_B_NA_3.nd2: [testng] [2024-11-27 01:27:45,610] [pool-1-thread-1] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.avi: [testng] [2024-11-27 01:27:46,383] [pool-1-thread-6] Initializing /data/liang/2x2 bad.nd2: [testng] [2024-11-27 01:27:47,946] [pool-1-thread-7] Initializing /data/kevin/lipo100nmPEG_1.nd2: [testng] [2024-11-27 01:27:49,397] [pool-1-thread-8] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-11-27 01:27:50,617] [pool-1-thread-10] Initializing /data/qa-28066/20191203-htirf-sona.nd2: [testng] [2024-11-27 01:27:51,677] [pool-1-thread-11] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-11-27 01:27:53,069] [pool-1-thread-4] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-11-27 01:28:00,366] [pool-1-thread-5] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-11-27 01:28:03,013] [pool-1-thread-1] Initializing /data/richard/KitWv#67.avi: [testng] [2024-11-27 01:28:06,058] [pool-1-thread-7] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-11-27 01:28:07,218] [pool-1-thread-8] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-11-27 01:28:08,453] [pool-1-thread-10] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-11-27 01:28:09,529] [pool-1-thread-3] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-11-27 01:28:11,786] [pool-1-thread-9] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-11-27 01:28:13,074] [pool-1-thread-11] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-11-27 01:28:14,811] [pool-1-thread-6] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-11-27 01:28:21,556] [pool-1-thread-5] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-11-27 01:28:24,464] [pool-1-thread-10] Initializing /data/josh/CGE1.nd2: [testng] [2024-11-27 01:28:26,294] [pool-1-thread-7] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-11-27 01:28:27,326] [pool-1-thread-8] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-11-27 01:28:29,004] [pool-1-thread-11] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-11-27 01:28:33,030] [pool-1-thread-3] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-11-27 01:28:34,844] [pool-1-thread-10] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-11-27 01:28:37,331] [pool-1-thread-7] Initializing /data/kyle/F301.nd2: [testng] [2024-11-27 01:28:39,618] [pool-1-thread-9] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-11-27 01:28:40,784] [pool-1-thread-5] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-11-27 01:28:42,861] [pool-1-thread-11] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-11-27 01:28:43,933] [pool-1-thread-8] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-11-27 01:28:48,151] [pool-1-thread-1] Initializing /data/henry/large image.nd2: [testng] [2024-11-27 01:28:49,749] [pool-1-thread-3] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-11-27 01:28:52,887] [pool-1-thread-10] Initializing /data/nadya/flat.nd2: [testng] [2024-11-27 01:28:56,048] [pool-1-thread-9] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-11-27 01:28:58,549] [pool-1-thread-6] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-11-27 01:28:59,876] [pool-1-thread-5] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-11-27 01:29:01,163] [pool-1-thread-11] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-11-27 01:29:04,765] [pool-1-thread-8] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-11-27 01:29:06,010] [pool-1-thread-7] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-11-27 01:29:08,466] [pool-1-thread-1] Initializing /data/david/NDSequence012.nd2: [testng] [2024-11-27 01:29:09,988] [pool-1-thread-10] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-11-27 01:29:11,442] [pool-1-thread-3] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-11-27 01:29:13,051] [pool-1-thread-9] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-11-27 01:29:18,475] [pool-1-thread-5] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-11-27 01:29:21,775] [pool-1-thread-6] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-11-27 01:29:23,218] [pool-1-thread-12] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-11-27 01:29:44,738] [pool-1-thread-2] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-11-27 01:29:47,118] [pool-1-thread-11] Initializing /data/kevin/test1.nd2: [testng] [2024-11-27 01:29:48,578] [pool-1-thread-10] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-11-27 01:29:49,905] [pool-1-thread-7] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-11-27 01:29:51,248] [pool-1-thread-8] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-11-27 01:29:52,641] [pool-1-thread-1] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-11-27 01:29:55,662] [pool-1-thread-9] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-11-27 01:30:00,224] [pool-1-thread-3] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-11-27 01:30:01,758] [pool-1-thread-6] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-11-27 01:30:03,332] [pool-1-thread-5] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-11-27 01:30:05,037] [pool-1-thread-11] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-11-27 01:30:07,198] [pool-1-thread-10] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-11-27 01:30:09,321] [pool-1-thread-2] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-11-27 01:30:13,837] [pool-1-thread-1] Initializing /data/kyle/B204.nd2: [testng] [2024-11-27 01:30:15,558] [pool-1-thread-8] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-11-27 01:30:19,024] [pool-1-thread-7] Initializing /data/david/NDSequence011.nd2: [testng] [2024-11-27 01:30:20,675] [pool-1-thread-9] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-11-27 01:30:26,568] [pool-1-thread-5] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-11-27 01:30:29,255] [pool-1-thread-3] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-11-27 01:30:34,724] [pool-1-thread-10] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-11-27 01:30:37,368] [pool-1-thread-7] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-11-27 01:30:38,824] [pool-1-thread-1] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-11-27 01:30:40,973] [pool-1-thread-11] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-11-27 01:30:42,531] [pool-1-thread-9] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-11-27 01:30:46,098] [pool-1-thread-8] Initializing /data/stefanie/nd27.nd2: [testng] [2024-11-27 01:30:47,779] [pool-1-thread-3] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-11-27 01:30:50,462] [pool-1-thread-10] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-11-27 01:30:54,401] [pool-1-thread-7] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-11-27 01:30:55,813] [pool-1-thread-2] Initializing /data/qa-17695/sample.nd2: [testng] [2024-11-27 01:30:57,100] [pool-1-thread-6] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-11-27 01:30:59,238] [pool-1-thread-5] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-11-27 01:31:00,383] [pool-1-thread-1] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-11-27 01:31:01,510] [pool-1-thread-11] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-11-27 01:31:06,787] [pool-1-thread-10] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-11-27 01:31:09,611] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-11-27 01:31:11,184] [pool-1-thread-9] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-11-27 01:31:17,935] [pool-1-thread-1] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-11-27 01:31:19,539] [pool-1-thread-7] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-11-27 01:35:11,859] [pool-1-thread-2] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-11-27 01:35:13,194] [pool-1-thread-5] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-11-27 01:35:15,875] [pool-1-thread-6] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-11-27 01:35:20,568] [pool-1-thread-8] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-11-27 01:35:22,842] [pool-1-thread-9] Initializing /data/david/_t4h f.nd2: [testng] [2024-11-27 01:35:23,923] [pool-1-thread-10] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-11-27 01:35:26,920] [pool-1-thread-6] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-11-27 01:35:28,186] [pool-1-thread-5] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-11-27 01:35:29,641] [pool-1-thread-1] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-11-27 01:35:30,983] [pool-1-thread-2] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-11-27 01:35:36,529] [pool-1-thread-8] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-11-27 01:35:40,003] [pool-1-thread-9] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-11-27 01:35:42,364] [pool-1-thread-6] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-11-27 01:35:45,992] [pool-1-thread-5] Initializing /data/qa-7572/cells.nd2: [testng] [2024-11-27 01:35:47,623] [pool-1-thread-2] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-11-27 01:35:49,537] [pool-1-thread-1] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-11-27 01:36:23,887] [pool-1-thread-11] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-11-27 01:36:26,455] [pool-1-thread-10] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-11-27 01:36:27,715] [pool-1-thread-8] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-11-27 01:36:28,852] [pool-1-thread-9] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-11-27 01:36:33,200] [pool-1-thread-6] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-11-27 01:36:35,524] [pool-1-thread-5] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-11-27 01:36:37,661] [pool-1-thread-2] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-11-27 01:36:38,958] [pool-1-thread-9] Initializing /data/bernhard/962.nd2: [testng] [2024-11-27 01:36:40,116] [pool-1-thread-8] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-11-27 01:36:45,109] [pool-1-thread-11] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-11-27 01:36:47,591] [pool-1-thread-6] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-11-27 01:36:51,255] [pool-1-thread-5] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-11-27 01:36:56,233] [pool-1-thread-2] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-11-27 01:37:01,836] [pool-1-thread-6] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-11-27 01:37:03,571] [pool-1-thread-8] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-11-27 01:37:08,159] [pool-1-thread-5] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-11-27 01:37:11,449] [pool-1-thread-9] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-11-27 01:37:13,172] [pool-1-thread-10] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 60 minutes 16 seconds Finished: SUCCESS