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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9062150945698601041.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42561_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:07:58,463 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:07:58,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:07:58,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:07:58,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:07:58,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:07:58,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:07:58,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:07:58,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:07:58,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:07:58,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:07:58,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:07:58,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:07:58,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:07:58,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:07:58,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:07:58,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:07:58,652 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:07:58,653 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:07:58,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:07:58,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:07:58,653 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:07:58,654 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:07:58,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 04:07:58,662] [main] java.version = 17.0.2 [testng] 04:07:58,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:07:58,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:58,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_04-07-58.log] [testng] 04:07:58,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 04:07:58,707] [main] testng.directory = /data [testng] [2024-11-27 04:07:58,707] [main] testng.configDirectory = /config [testng] [2024-11-27 04:07:58,715] [main] testng.multiplier = 1.0 [testng] [2024-11-27 04:07:58,716] [main] testng.in-memory = false [testng] [2024-11-27 04:07:58,716] [main] testng.allow-missing = false [testng] [2024-11-27 04:07:58,716] [main] user.language = en [testng] [2024-11-27 04:07:58,716] [main] user.country = ${user.country} [testng] [2024-11-27 04:07:58,717] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 04:11:11,430] [main] ---------------------------------------- [testng] [2024-11-27 04:11:11,430] [main] Total files: 15735 [testng] [2024-11-27 04:11:11,431] [main] Scan time: 192.713 s (12 ms/file) [testng] [2024-11-27 04:11:11,431] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 04:14:40,799] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 04:14:40,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:14:40,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:40,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_04-14-40.log] [testng] 04:14:40,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bf88b09 - End of configuration. [testng] [2024-11-27 04:14:41,695] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 04:14:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:14:41,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:41,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_04-14-41.log] [testng] 04:14:41,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73abb052 - End of configuration. [testng] [2024-11-27 04:14:42,997] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 04:14:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:14:42,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:42,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_04-14-42.log] [testng] 04:14:42,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ee283f1 - End of configuration. [testng] [2024-11-27 04:14:43,898] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 04:14:43,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:14:43,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:43,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_04-14-43.log] [testng] 04:14:43,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bbe5c - End of configuration. [testng] [2024-11-27 04:14:45,866] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 04:14:45,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:14:45,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:45,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_04-14-45.log] [testng] 04:14:45,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e2b3ef9 - End of configuration. [testng] [2024-11-27 04:14:47,109] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 04:14:47,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:14:47,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:47,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_04-14-47.log] [testng] 04:14:47,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b7a897 - End of configuration. [testng] [2024-11-27 04:14:48,241] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 04:14:48,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:14:48,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:48,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_04-14-48.log] [testng] 04:14:48,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e2341cf - End of configuration. [testng] [2024-11-27 04:14:49,315] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 04:14:49,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:14:49,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:49,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_04-14-49.log] [testng] 04:14:49,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79860d34 - End of configuration. [testng] [2024-11-27 04:14:50,366] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 04:14:50,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:14:50,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:50,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_04-14-50.log] [testng] 04:14:50,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6100e715 - End of configuration. [testng] [2024-11-27 04:14:51,300] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 04:14:51,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:14:51,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:51,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_04-14-51.log] [testng] 04:14:51,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424163b4 - End of configuration. [testng] [2024-11-27 04:14:52,243] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 04:14:52,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:14:52,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:52,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_04-14-52.log] [testng] 04:14:52,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f600f56 - End of configuration. [testng] [2024-11-27 04:14:53,154] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 04:14:53,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:14:53,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:14:53,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_04-14-53.log] [testng] 04:14:53,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c6bda1 - End of configuration. [testng] [2024-11-27 04:15:15,527] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-27 04:15:24,178] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-27 04:15:27,287] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-27 04:15:55,908] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-27 04:18:05,194] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-27 04:18:07,284] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-27 04:18:18,566] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-27 04:18:36,242] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-27 04:19:22,284] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-27 04:19:52,112] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-27 04:19:58,263] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-27 04:20:13,060] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-27 04:20:28,430] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-27 04:20:46,405] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-27 04:21:02,779] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-27 04:21:24,145] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-27 04:21:28,146] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-27 04:21:32,769] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-27 04:21:50,524] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-27 04:21:53,284] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-27 04:22:19,063] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-27 04:22:39,128] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-27 04:22:42,328] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-27 04:22:59,736] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-27 04:23:19,772] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-27 04:23:27,236] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-27 04:23:37,503] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-27 04:23:45,942] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-27 04:24:00,062] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-27 04:24:16,604] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-27 04:25:08,437] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-27 04:25:55,803] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-27 04:26:30,656] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-27 04:27:02,431] [pool-1-thread-12] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-27 04:27:04,909] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-27 04:31:11,108] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-27 04:32:02,167] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-27 04:32:43,223] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-27 04:33:19,070] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-27 04:33:24,149] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-27 04:34:05,418] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-27 04:34:28,569] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-27 04:34:42,718] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-27 04:35:08,821] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-27 04:35:18,413] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-27 04:37:26,827] [pool-1-thread-3] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-27 04:39:39,786] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-27 04:42:04,234] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-27 04:43:01,870] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-27 04:44:36,950] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-27 04:45:58,813] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-27 04:46:35,053] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-27 04:52:34,036] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-27 04:53:19,146] [pool-1-thread-10] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-27 04:53:52,820] [pool-1-thread-12] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-27 04:54:01,947] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-27 04:55:04,091] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-27 04:57:28,025] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-27 04:57:54,895] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-27 04:58:10,252] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-27 04:58:56,559] [pool-1-thread-1] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-27 04:59:02,718] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-27 05:01:50,310] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-27 05:04:34,161] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-27 05:04:38,189] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-27 05:04:58,486] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-27 05:05:53,690] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-27 05:06:03,577] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-27 05:06:26,203] [pool-1-thread-6] Initializing /data/converted/michel/c.tif: [testng] [2024-11-27 05:06:47,767] [pool-1-thread-5] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-27 05:07:20,870] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-27 05:07:26,779] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-27 05:07:29,848] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-27 05:08:19,057] [pool-1-thread-5] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-27 05:10:43,644] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-27 05:12:19,409] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-27 05:12:25,365] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-27 05:13:29,281] [pool-1-thread-12] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-27 05:14:39,164] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-27 05:16:01,403] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-27 05:18:59,928] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-27 05:19:36,820] [pool-1-thread-1] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-27 05:19:50,751] [pool-1-thread-10] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-27 05:20:59,942] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-27 05:22:17,194] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-27 05:22:30,729] [pool-1-thread-1] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-27 05:22:50,424] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-27 05:22:52,930] [pool-1-thread-4] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-27 05:23:09,172] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-27 05:23:30,594] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-27 05:23:38,102] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-27 05:23:51,826] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-27 05:24:18,653] [pool-1-thread-4] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-27 05:24:29,032] [pool-1-thread-12] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-27 05:24:33,752] [pool-1-thread-6] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-27 05:25:28,196] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-27 05:26:02,208] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-27 05:26:18,588] [pool-1-thread-3] Initializing /data/converted/michel/d.tif: [testng] [2024-11-27 05:26:20,944] [pool-1-thread-7] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-27 05:27:06,595] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-27 05:27:12,727] [pool-1-thread-3] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-27 05:27:43,970] [pool-1-thread-7] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-27 05:27:54,457] [pool-1-thread-3] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-27 05:28:04,247] [pool-1-thread-5] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-27 05:28:40,526] [pool-1-thread-5] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-27 05:28:57,801] [pool-1-thread-3] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-27 05:29:18,200] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-27 05:29:27,464] [pool-1-thread-8] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-27 05:29:51,062] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-27 05:30:01,507] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-27 05:30:05,869] [pool-1-thread-8] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-27 05:30:20,123] [pool-1-thread-8] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-27 05:30:33,398] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 06:17:13,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:17:13,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:17:13,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_06-17-13.log] [testng] 06:17:13,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f58a29a - End of configuration. [testng] 06:22:29,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:22:29,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:22:29,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_06-22-29.log] [testng] 06:22:29,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 134 minutes 37 seconds Finished: SUCCESS