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Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15950722215332272761.sh + '[' psd = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42565_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:23:16,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:23:16,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:23:16,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:23:16,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:23:16,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:23:16,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:23:16,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:23:16,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:23:16,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 04:23:16,124 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 04:23:16,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 505 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 04:23:16,133] [main] java.version = 17.0.2 [testng] 04:23:16,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:23:16,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:16,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_04-23-16.log] [testng] 04:23:16,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 04:23:16,181] [main] testng.directory = /data [testng] [2024-11-27 04:23:16,181] [main] testng.configDirectory = /config [testng] [2024-11-27 04:23:16,190] [main] testng.multiplier = 1.0 [testng] [2024-11-27 04:23:16,191] [main] testng.in-memory = false [testng] [2024-11-27 04:23:16,191] [main] testng.allow-missing = false [testng] [2024-11-27 04:23:16,191] [main] user.language = en [testng] [2024-11-27 04:23:16,191] [main] user.country = ${user.country} [testng] [2024-11-27 04:23:16,191] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 04:23:16,833] [main] ---------------------------------------- [testng] [2024-11-27 04:23:16,833] [main] Total files: 18 [testng] [2024-11-27 04:23:16,834] [main] Scan time: 0.642 s (35 ms/file) [testng] [2024-11-27 04:23:16,834] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 04:23:24,852] [pool-1-thread-1] Initializing /data/ascb/607x.psd: [testng] 04:23:24,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:23:24,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:24,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_04-23-24.log] [testng] 04:23:24,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e1b94ca - End of configuration. [testng] [2024-11-27 04:23:25,210] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd: [testng] 04:23:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:23:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:25,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_04-23-25.log] [testng] 04:23:25,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1869528d - End of configuration. [testng] [2024-11-27 04:23:25,647] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 04:23:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:23:25,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:25,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_04-23-25.log] [testng] 04:23:25,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@633d1bcf - End of configuration. [testng] [2024-11-27 04:23:25,999] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 04:23:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:23:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:26,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_04-23-26.log] [testng] 04:23:26,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2540d21d - End of configuration. [testng] [2024-11-27 04:23:26,336] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] 04:23:26,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:23:26,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:26,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_04-23-26.log] [testng] 04:23:26,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e52e5cb - End of configuration. [testng] [2024-11-27 04:23:26,662] [pool-1-thread-8] Initializing /data/cris/house.tif: [testng] 04:23:26,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:23:26,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:26,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_04-23-26.log] [testng] 04:23:26,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7de60de1 - End of configuration. [testng] [2024-11-27 04:23:27,808] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 04:23:27,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:23:27,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:27,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_04-23-27.log] [testng] 04:23:27,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50088c86 - End of configuration. [testng] [2024-11-27 04:23:28,162] [pool-1-thread-6] Initializing /data/big-images/8kx8k.psd: [testng] 04:23:28,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:23:28,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:28,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_04-23-28.log] [testng] 04:23:28,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1ef9b0 - End of configuration. [testng] [2024-11-27 04:23:28,500] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd: [testng] 04:23:28,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:23:28,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:28,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_04-23-28.log] [testng] 04:23:28,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bcd21ea - End of configuration. [testng] [2024-11-27 04:23:28,839] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd: [testng] 04:23:28,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:23:28,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:28,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_04-23-28.log] [testng] 04:23:28,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8e8eb5 - End of configuration. [testng] [2024-11-27 04:23:29,158] [pool-1-thread-3] Initializing /data/misc/smilie.psd: [testng] 04:23:29,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:23:29,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:29,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_04-23-29.log] [testng] 04:23:29,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb46752 - End of configuration. [testng] [2024-11-27 04:23:29,502] [pool-1-thread-2] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 04:23:29,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:23:29,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:29,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_04-23-29.log] [testng] 04:23:29,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ed0a8d4 - End of configuration. [testng] [2024-11-27 04:23:34,159] [pool-1-thread-4] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-11-27 04:23:34,640] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [2024-11-27 04:23:35,152] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] [2024-11-27 04:23:35,707] [pool-1-thread-7] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2024-11-27 04:23:36,171] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-11-27 04:23:36,564] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 seconds Finished: SUCCESS