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Started by upstream project "BIOFORMATS-test-repo" build number 271 originally caused by: Started by upstream project "Trigger" build number 293 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17739869223002687956.sh + '[' targa = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42669_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:42:40,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:42:40,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:42:40,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:40,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:40,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:42:40,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:42:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:42:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:40,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:40,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:42:40,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:42:40,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:42:40,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:42:40,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:42:40,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:42:40,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:42:40,512 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:42:40,513 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:42:40,513 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:42:40,513 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:42:40,513 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:42:40,514 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:42:40,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-28 00:42:40,523] [main] java.version = 21 [testng] 00:42:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:42:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:40,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_00-42-40.log] [testng] 00:42:40,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-28 00:42:40,574] [main] testng.directory = /data [testng] [2024-11-28 00:42:40,574] [main] testng.configDirectory = /config [testng] [2024-11-28 00:42:40,583] [main] testng.multiplier = 1.0 [testng] [2024-11-28 00:42:40,584] [main] testng.in-memory = false [testng] [2024-11-28 00:42:40,584] [main] testng.allow-missing = false [testng] [2024-11-28 00:42:40,584] [main] user.language = en [testng] [2024-11-28 00:42:40,584] [main] user.country = ${user.country} [testng] [2024-11-28 00:42:40,584] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-28 00:42:41,068] [main] ---------------------------------------- [testng] [2024-11-28 00:42:41,069] [main] Total files: 21 [testng] [2024-11-28 00:42:41,069] [main] Scan time: 0.483 s (23 ms/file) [testng] [2024-11-28 00:42:41,069] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-28 00:42:48,546] [pool-1-thread-1] Initializing /data/samples/UBW8.TGA: [testng] 00:42:48,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:42:48,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:48,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_00-42-48.log] [testng] 00:42:48,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17fd3bd8 - End of configuration. [testng] [2024-11-28 00:42:48,799] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA: [testng] 00:42:48,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:42:48,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:48,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_00-42-48.log] [testng] 00:42:48,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7426a972 - End of configuration. [testng] [2024-11-28 00:42:49,065] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:42:49,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:42:49,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:49,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_00-42-49.log] [testng] 00:42:49,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f395f6 - End of configuration. [testng] [2024-11-28 00:42:49,327] [pool-1-thread-10] Initializing /data/samples/CBW8.TGA: [testng] 00:42:49,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:42:49,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:49,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_00-42-49.log] [testng] 00:42:49,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140b4a28 - End of configuration. [testng] [2024-11-28 00:42:49,549] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:42:49,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:42:49,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:49,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_00-42-49.log] [testng] 00:42:49,550 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c5e6fa - End of configuration. [testng] [2024-11-28 00:42:49,833] [pool-1-thread-8] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:42:49,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:42:49,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:49,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_00-42-49.log] [testng] 00:42:49,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@954c1f5 - End of configuration. [testng] [2024-11-28 00:42:50,170] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 00:42:50,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:42:50,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_00-42-50.log] [testng] 00:42:50,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5300cb8d - End of configuration. [testng] [2024-11-28 00:42:50,472] [pool-1-thread-6] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:42:50,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:42:50,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_00-42-50.log] [testng] 00:42:50,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378b64e6 - End of configuration. [testng] [2024-11-28 00:42:50,728] [pool-1-thread-5] Initializing /data/samples/CTC24.TGA: [testng] 00:42:50,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:42:50,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_00-42-50.log] [testng] 00:42:50,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729cf4f9 - End of configuration. [testng] [2024-11-28 00:42:50,967] [pool-1-thread-4] Initializing /data/samples/XING_B16.TGA: [testng] 00:42:50,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:42:50,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:50,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_00-42-50.log] [testng] 00:42:50,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54efd25b - End of configuration. [testng] [2024-11-28 00:42:51,258] [pool-1-thread-3] Initializing /data/samples/UTC32.TGA: [testng] 00:42:51,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:42:51,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:51,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_00-42-51.log] [testng] 00:42:51,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1ee04e - End of configuration. [testng] [2024-11-28 00:42:51,623] [pool-1-thread-2] Initializing /data/samples/XING_T32.TGA: [testng] 00:42:51,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:42:51,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:51,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_00-42-51.log] [testng] 00:42:51,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4afc8a22 - End of configuration. [testng] [2024-11-28 00:42:58,184] [pool-1-thread-8] Initializing /data/samples/UTC16.TGA: [testng] [2024-11-28 00:42:58,645] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] [2024-11-28 00:42:58,984] [pool-1-thread-3] Initializing /data/samples/CTC16.TGA: [testng] [2024-11-28 00:42:59,323] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-28 00:42:59,667] [pool-1-thread-11] Initializing /data/samples/CCM8.TGA: [testng] [2024-11-28 00:43:00,102] [pool-1-thread-2] Initializing /data/samples/MARBLES.TGA: [testng] [2024-11-28 00:43:00,621] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-28 00:43:01,251] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-11-28 00:43:01,842] [pool-1-thread-7] Initializing /data/samples/UCM8.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS