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Started by upstream project "BIOFORMATS-test-repo" build number 271 originally caused by: Started by upstream project "Trigger" build number 293 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13781373808866812773.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42673_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:49:19,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:49:19,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:49:19,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:19,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:49:19,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:49:19,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:49:19,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:49:19,405 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:19,406 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:49:19,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:49:19,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:49:19,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:49:19,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:49:19,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:49:19,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:49:19,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:49:19,613 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:49:19,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:49:19,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:49:19,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:49:19,614 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:49:19,615 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:49:19,615 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-28 00:49:19,625] [main] java.version = 21 [testng] 00:49:19,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:49:19,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:19,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_00-49-19.log] [testng] 00:49:19,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-28 00:49:19,675] [main] testng.directory = /data [testng] [2024-11-28 00:49:19,675] [main] testng.configDirectory = /config [testng] [2024-11-28 00:49:19,684] [main] testng.multiplier = 1.0 [testng] [2024-11-28 00:49:19,685] [main] testng.in-memory = false [testng] [2024-11-28 00:49:19,685] [main] testng.allow-missing = false [testng] [2024-11-28 00:49:19,685] [main] user.language = en [testng] [2024-11-28 00:49:19,685] [main] user.country = ${user.country} [testng] [2024-11-28 00:49:19,685] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-28 00:49:47,834] [main] ---------------------------------------- [testng] [2024-11-28 00:49:47,834] [main] Total files: 259 [testng] [2024-11-28 00:49:47,834] [main] Scan time: 28.149 s (108 ms/file) [testng] [2024-11-28 00:49:47,834] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-28 00:58:25,424] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 00:58:25,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:58:25,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:25,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_00-58-25.log] [testng] 00:58:25,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c31bca - End of configuration. [testng] [2024-11-28 00:58:33,565] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 00:58:33,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:58:33,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:33,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_00-58-33.log] [testng] 00:58:33,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c070f00 - End of configuration. [testng] [2024-11-28 00:58:34,020] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 00:58:34,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:58:34,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:34,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_00-58-34.log] [testng] 00:58:34,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a8198a - End of configuration. [testng] [2024-11-28 00:58:34,058] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 00:58:34,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:58:34,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:34,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_00-58-34.log] [testng] 00:58:34,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b46a36f - End of configuration. [testng] [2024-11-28 00:58:34,420] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 00:58:34,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:58:34,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:34,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_00-58-34.log] [testng] 00:58:34,422 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75efce7 - End of configuration. [testng] [2024-11-28 00:58:34,634] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 00:58:34,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:58:34,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:34,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_00-58-34.log] [testng] 00:58:34,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1286aed8 - End of configuration. [testng] [2024-11-28 00:58:37,006] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 00:58:37,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:58:37,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:37,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_00-58-37.log] [testng] 00:58:37,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6c22e5 - End of configuration. [testng] [2024-11-28 00:58:37,229] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 00:58:37,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:58:37,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:37,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_00-58-37.log] [testng] 00:58:37,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e519c94 - End of configuration. [testng] [2024-11-28 00:58:37,445] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 00:58:37,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:58:37,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:37,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_00-58-37.log] [testng] 00:58:37,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20360706 - End of configuration. [testng] [2024-11-28 00:58:37,727] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 00:58:37,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:58:37,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:37,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_00-58-37.log] [testng] 00:58:37,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ee1bb3d - End of configuration. [testng] [2024-11-28 00:58:55,205] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 00:58:55,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:58:55,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:55,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_00-58-55.log] [testng] 00:58:55,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@500fb382 - End of configuration. [testng] [2024-11-28 00:58:55,389] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 00:58:55,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:58:55,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:58:55,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_00-58-55.log] [testng] 00:58:55,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@919ca1a - End of configuration. [testng] [2024-11-28 00:58:58,924] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-28 00:59:03,610] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-11-28 00:59:04,794] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-11-28 00:59:05,259] [pool-1-thread-6] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-28 00:59:05,670] [pool-1-thread-12] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-28 00:59:05,782] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-28 00:59:09,041] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-28 00:59:10,130] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-28 00:59:11,050] [pool-1-thread-6] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-28 00:59:13,569] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-28 00:59:14,753] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] [2024-11-28 00:59:15,684] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-28 00:59:16,622] [pool-1-thread-12] Initializing /data/johannes/step3.bmp: [testng] [2024-11-28 00:59:17,922] [pool-1-thread-9] Initializing /data/glen/Image0002.oif: [testng] [2024-11-28 00:59:21,184] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-28 00:59:21,649] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-28 00:59:22,702] [pool-1-thread-10] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-28 00:59:23,759] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-28 00:59:26,497] [pool-1-thread-3] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-28 00:59:27,145] [pool-1-thread-12] Initializing /data/johannes/step1.bmp: [testng] [2024-11-28 00:59:27,760] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-28 00:59:33,175] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-28 00:59:35,560] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-28 00:59:36,530] [pool-1-thread-3] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-28 00:59:37,121] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-28 00:59:39,290] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-28 00:59:40,652] [pool-1-thread-6] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-28 00:59:42,100] [pool-1-thread-11] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-28 00:59:42,550] [pool-1-thread-3] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-28 00:59:43,425] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-28 00:59:43,994] [pool-1-thread-5] Initializing /data/michael/CELL3.oib: [testng] [2024-11-28 00:59:46,441] [pool-1-thread-6] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-28 00:59:47,033] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-28 00:59:47,809] [pool-1-thread-8] Initializing /data/simon/never_worked.oib: [testng] [2024-11-28 00:59:49,478] [pool-1-thread-12] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-28 00:59:51,125] [pool-1-thread-5] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-28 00:59:53,857] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-28 00:59:56,539] [pool-1-thread-8] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-28 01:00:07,859] [pool-1-thread-6] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-28 01:00:08,995] [pool-1-thread-11] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-28 01:00:12,515] [pool-1-thread-5] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-28 01:00:16,007] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-28 01:00:16,880] [pool-1-thread-7] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-28 01:00:17,611] [pool-1-thread-11] Initializing /data/marc/V0606L.oib: [testng] [2024-11-28 01:00:21,705] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-28 01:00:24,898] [pool-1-thread-7] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-28 01:00:25,542] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-28 01:00:28,686] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-28 01:00:30,445] [pool-1-thread-7] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-28 01:00:31,457] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-28 01:00:32,151] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-28 01:00:35,429] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-28 01:00:44,566] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-28 01:00:59,456] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-28 01:01:00,129] [pool-1-thread-6] Initializing /data/david/Image0016.oif: [testng] [2024-11-28 01:01:01,400] [pool-1-thread-12] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-28 01:01:03,746] [pool-1-thread-3] Initializing /data/marc/V0606J.oib: [testng] [2024-11-28 01:01:08,199] [pool-1-thread-7] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-28 01:01:30,494] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-28 01:01:36,395] [pool-1-thread-3] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-28 01:02:28,138] [pool-1-thread-10] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-28 01:02:40,842] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-28 01:02:47,255] [pool-1-thread-10] Initializing /data/sten/01.oib: [testng] [2024-11-28 01:02:52,431] [pool-1-thread-10] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-28 01:02:54,634] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-28 01:02:58,121] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-28 01:03:01,498] [pool-1-thread-6] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-28 01:03:07,362] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-28 01:09:36,459] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2024-11-28 01:09:45,162] [pool-1-thread-12] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-28 01:09:55,095] [pool-1-thread-12] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-28 01:15:09,967] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-28 01:15:48,235] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-28 01:15:59,420] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-28 01:16:10,428] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-28 01:16:23,736] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-28 01:17:38,288] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-28 01:17:50,120] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-28 01:18:00,204] [pool-1-thread-2] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-28 01:18:10,055] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-28 01:18:19,542] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] [2024-11-28 01:18:23,439] [pool-1-thread-10] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-28 01:18:34,821] [pool-1-thread-10] Initializing /data/glen/111407.oif: [testng] [2024-11-28 01:19:04,937] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-28 01:22:39,730] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-28 01:22:49,342] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-28 01:22:57,934] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-28 01:27:39,136] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-28 01:28:59,876] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-28 01:29:31,216] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-28 01:30:07,117] [pool-1-thread-8] Initializing /data/glen/simulstack.oib: [testng] [2024-11-28 01:30:16,977] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-28 01:30:28,983] [pool-1-thread-8] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-28 01:30:38,181] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-28 01:30:51,031] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-11-28 01:31:01,051] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-28 01:31:20,756] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-28 01:34:27,534] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-28 01:35:43,978] [pool-1-thread-5] Initializing /data/brian/FLIP.oib: [testng] [2024-11-28 01:35:53,511] [pool-1-thread-5] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-28 01:37:27,608] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-28 01:43:09,735] [pool-1-thread-10] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-28 01:43:40,574] [pool-1-thread-2] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-28 01:43:41,619] [pool-1-thread-11] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-28 01:43:48,728] [pool-1-thread-10] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-28 01:43:49,693] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-28 01:43:52,748] [pool-1-thread-11] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-28 01:43:57,930] [pool-1-thread-10] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-28 01:44:05,279] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-28 01:44:12,525] [pool-1-thread-10] Initializing /data/karl/Image0009.oib: [testng] [2024-11-28 01:44:19,093] [pool-1-thread-10] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-28 01:44:47,921] [pool-1-thread-2] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-28 01:44:55,991] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-28 01:45:04,290] [pool-1-thread-2] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-28 01:47:48,613] [pool-1-thread-11] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-28 01:47:56,353] [pool-1-thread-11] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-28 01:48:03,012] [pool-1-thread-11] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-28 01:48:11,803] [pool-1-thread-5] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-28 01:48:16,937] [pool-1-thread-11] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-28 01:48:23,431] [pool-1-thread-11] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-28 01:51:02,172] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-28 01:51:06,678] [pool-1-thread-12] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-28 01:55:35,944] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-11-28 01:56:42,514] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-28 01:56:49,422] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-28 01:56:55,455] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-28 01:57:41,633] [pool-1-thread-12] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-28 01:57:51,528] [pool-1-thread-12] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-28 01:57:56,942] [pool-1-thread-12] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-28 01:58:03,848] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-28 01:58:09,383] [pool-1-thread-12] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-28 01:58:51,229] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:34:09,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:34:09,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:09,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_02-34-09.log] [testng] 02:34:09,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140e9e66 - End of configuration. [testng] 03:06:14,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:06:14,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:06:14,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_03-06-14.log] [testng] 03:06:14,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222563bd - End of configuration. [testng] 03:28:21,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:28:21,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:28:21,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_03-28-21.log] [testng] 03:28:21,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@611be135 - End of configuration. [testng] 03:40:48,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:40:48,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:40:48,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_03-40-48.log] [testng] 03:40:48,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 171 minutes 31 seconds Finished: SUCCESS