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Started by upstream project "BIOFORMATS-test-repo" build number 271 originally caused by: Started by upstream project "Trigger" build number 293 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8761351254552722143.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42682_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:57:29,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:57:29,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:57:29,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:29,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:57:29,051 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:57:29,052 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:57:29,052 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:57:29,052 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:29,052 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:57:29,053 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:57:29,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:57:29,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:57:29,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:57:29,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:57:29,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:57:29,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:57:29,254 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:57:29,255 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:57:29,255 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:57:29,255 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:57:29,255 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:57:29,256 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:57:29,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-28 00:57:29,265] [main] java.version = 21 [testng] 00:57:29,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:57:29,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:29,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-28_00-57-29.log] [testng] 00:57:29,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-11-28 00:57:29,316] [main] testng.directory = /data [testng] [2024-11-28 00:57:29,316] [main] testng.configDirectory = /config [testng] [2024-11-28 00:57:29,325] [main] testng.multiplier = 1.0 [testng] [2024-11-28 00:57:29,325] [main] testng.in-memory = false [testng] [2024-11-28 00:57:29,325] [main] testng.allow-missing = false [testng] [2024-11-28 00:57:29,326] [main] user.language = en [testng] [2024-11-28 00:57:29,326] [main] user.country = ${user.country} [testng] [2024-11-28 00:57:29,326] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-28 00:57:29,866] [main] ---------------------------------------- [testng] [2024-11-28 00:57:29,866] [main] Total files: 25 [testng] [2024-11-28 00:57:29,866] [main] Scan time: 0.54 s (21 ms/file) [testng] [2024-11-28 00:57:29,866] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-28 00:57:35,123] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:57:35,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:57:35,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-28_00-57-35.log] [testng] 00:57:35,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@777c9543 - End of configuration. [testng] [2024-11-28 00:57:35,242] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] 00:57:35,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:57:35,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-28_00-57-35.log] [testng] 00:57:35,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f93339 - End of configuration. [testng] [2024-11-28 00:57:35,368] [pool-1-thread-11] Initializing /data/jqd/mireSixteen.pict: [testng] 00:57:35,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:57:35,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-28_00-57-35.log] [testng] 00:57:35,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d4b692 - End of configuration. [testng] [2024-11-28 00:57:35,473] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:57:35,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:57:35,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-28_00-57-35.log] [testng] 00:57:35,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6a066a - End of configuration. [testng] [2024-11-28 00:57:35,572] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] 00:57:35,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:57:35,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-28_00-57-35.log] [testng] 00:57:35,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ba95b59 - End of configuration. [testng] [2024-11-28 00:57:35,721] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 00:57:35,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:57:35,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-28_00-57-35.log] [testng] 00:57:35,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201b024c - End of configuration. [testng] [2024-11-28 00:57:35,828] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] 00:57:35,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:57:35,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-28_00-57-35.log] [testng] 00:57:35,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b89bd71 - End of configuration. [testng] [2024-11-28 00:57:35,937] [pool-1-thread-6] Initializing /data/misc/planet.png: [testng] 00:57:35,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:57:35,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-28_00-57-35.log] [testng] 00:57:35,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cac88ed - End of configuration. [testng] [2024-11-28 00:57:35,952] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:57:35,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:57:35,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:35,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-28_00-57-35.log] [testng] 00:57:35,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67ced753 - End of configuration. [testng] [2024-11-28 00:57:36,213] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] 00:57:36,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:57:36,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:36,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-28_00-57-36.log] [testng] 00:57:36,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339e99d1 - End of configuration. [testng] [2024-11-28 00:57:36,531] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:57:36,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:57:36,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:36,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-28_00-57-36.log] [testng] 00:57:36,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27c0fc43 - End of configuration. [testng] [2024-11-28 00:57:36,864] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:57:36,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:57:36,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:57:36,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-28_00-57-36.log] [testng] 00:57:36,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23486705 - End of configuration. [testng] [2024-11-28 00:57:39,943] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-28 00:57:41,090] [pool-1-thread-11] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-11-28 00:57:41,703] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-28 00:57:42,048] [pool-1-thread-4] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-11-28 00:57:42,376] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] [2024-11-28 00:57:42,622] [pool-1-thread-8] Initializing /data/misc/planet.pict: [testng] [2024-11-28 00:57:42,832] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] [2024-11-28 00:57:42,992] [pool-1-thread-9] Initializing /data/brian/images/RED.PCT: [testng] [2024-11-28 00:57:43,126] [pool-1-thread-12] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-28 00:57:43,273] [pool-1-thread-3] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-28 00:57:43,532] [pool-1-thread-2] Initializing /data/brian/images/VENUS.pct: [testng] [2024-11-28 00:57:43,795] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-11-28 00:57:45,434] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS