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Started by upstream project "BIOFORMATS-test-repo" build number 272
originally caused by:
 Started by upstream project "Trigger" build number 294
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1105682328577111699.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42869_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:31:53,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:31:53,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 01:31:53,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:53,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:31:53,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:31:53,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:31:53,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:31:53,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:53,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:31:53,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:31:53,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:31:53,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:31:53,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:31:53,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:31:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:31:53,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:31:53,716 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:31:53,716 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:31:53,716 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:31:53,716 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:31:53,716 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 01:31:53,717 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 01:31:53,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-29 01:31:53,727] [main] java.version = 1.8.0_342
   [testng] 01:31:53,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:31:53,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:31:53,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_01-31-53.log]
   [testng] 01:31:53,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-11-29 01:31:53,779] [main] testng.directory = /data
   [testng] [2024-11-29 01:31:53,779] [main] testng.configDirectory = /config
   [testng] [2024-11-29 01:31:53,791] [main] testng.multiplier = 1.0
   [testng] [2024-11-29 01:31:53,792] [main] testng.in-memory = false
   [testng] [2024-11-29 01:31:53,792] [main] testng.allow-missing = false
   [testng] [2024-11-29 01:31:53,792] [main] user.language = en
   [testng] [2024-11-29 01:31:53,792] [main] user.country = ${user.country}
   [testng] [2024-11-29 01:31:53,792] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-11-29 01:32:08,355] [main] ----------------------------------------
   [testng] [2024-11-29 01:32:08,355] [main] Total files: 46
   [testng] [2024-11-29 01:32:08,355] [main] Scan time: 14.563 s (316 ms/file)
   [testng] [2024-11-29 01:32:08,356] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-29 01:32:55,217] [pool-1-thread-1] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif: 
   [testng] 01:32:55,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:32:55,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:55,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_01-32-55.log]
   [testng] 01:32:55,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10723584 - End of configuration.
   [testng] [2024-11-29 01:32:56,507] [pool-1-thread-12] Initializing /data/gerhard/test.vws: 
   [testng] 01:32:56,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:32:56,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:56,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_01-32-56.log]
   [testng] 01:32:56,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c8f7100 - End of configuration.
   [testng] [2024-11-29 01:32:56,986] [pool-1-thread-11] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif: 
   [testng] 01:32:56,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:32:56,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:56,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_01-32-56.log]
   [testng] 01:32:56,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601941cd - End of configuration.
   [testng] [2024-11-29 01:32:58,302] [pool-1-thread-10] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws: 
   [testng] 01:32:58,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:32:58,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:32:58,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_01-32-58.log]
   [testng] 01:32:58,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9d650cb - End of configuration.
   [testng] [2024-11-29 01:33:00,491] [pool-1-thread-9] Initializing /data/samples/fibre.vws: 
   [testng] 01:33:00,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:33:00,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:00,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_01-33-00.log]
   [testng] 01:33:00,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24640aba - End of configuration.
   [testng] [2024-11-29 01:33:00,878] [pool-1-thread-8] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws: 
   [testng] 01:33:00,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:33:00,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:00,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_01-33-00.log]
   [testng] 01:33:00,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cdfc793 - End of configuration.
   [testng] [2024-11-29 01:33:02,008] [pool-1-thread-7] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws: 
   [testng] 01:33:02,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:33:02,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:02,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_01-33-02.log]
   [testng] 01:33:02,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@147bbc59 - End of configuration.
   [testng] [2024-11-29 01:33:02,697] [pool-1-thread-6] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws: 
   [testng] 01:33:02,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:33:02,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:02,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_01-33-02.log]
   [testng] 01:33:02,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51cfd1f6 - End of configuration.
   [testng] [2024-11-29 01:33:03,131] [pool-1-thread-5] Initializing /data/ian/working_tillvision_vws/20120322.vws: 
   [testng] 01:33:03,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:33:03,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:03,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_01-33-03.log]
   [testng] 01:33:03,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c1d8f1 - End of configuration.
   [testng] [2024-11-29 01:33:07,316] [pool-1-thread-4] Initializing /data/andreas/090812E4.vws: 
   [testng] 01:33:07,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:33:07,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:07,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_01-33-07.log]
   [testng] 01:33:07,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ff6460e - End of configuration.
   [testng] [2024-11-29 01:33:09,345] [pool-1-thread-3] Initializing /data/imagesc-84715/not working.vws: 
   [testng] 01:33:09,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:33:09,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:09,346 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_01-33-09.log]
   [testng] 01:33:09,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516103bc - End of configuration.
   [testng] [2024-11-29 01:33:09,937] [pool-1-thread-2] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif: 
   [testng] 01:33:09,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:33:09,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:09,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_01-33-09.log]
   [testng] 01:33:09,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339bc98b - End of configuration.
   [testng] [2024-11-29 01:33:18,404] [pool-1-thread-9] Initializing /data/ian/non_working_tillvision_vws/20120404.vws: 
   [testng] [2024-11-29 01:33:23,137] [pool-1-thread-12] Initializing /data/venu/060310/drug addition _BAM.vws: 
   [testng] [2024-11-29 01:33:25,490] [pool-1-thread-11] Initializing /data/imagesc-84715/working.vws: 
   [testng] [2024-11-29 01:33:26,471] [pool-1-thread-1] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws: 
   [testng] [2024-11-29 01:33:27,136] [pool-1-thread-2] Initializing /data/andreas/090811E1.vws: 
   [testng] [2024-11-29 01:33:43,172] [pool-1-thread-3] Initializing /data/christian/080807ionophore/080807ionophore3.vws: 
   [testng] [2024-11-29 01:33:44,595] [pool-1-thread-6] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif: 
   [testng] [2024-11-29 01:33:49,077] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws: 
   [testng] [2024-11-29 01:33:54,173] [pool-1-thread-8] Initializing /data/stephan/two sequences.vws: 
   [testng] [2024-11-29 01:33:54,887] [pool-1-thread-6] Initializing /data/christian/080807epi/080807epi2.vws: 
   [testng] [2024-11-29 01:33:56,525] [pool-1-thread-12] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws: 
   [testng] [2024-11-29 01:34:01,691] [pool-1-thread-1] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws: 
   [testng] [2024-11-29 01:34:03,118] [pool-1-thread-3] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1325, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 17 minutes 26 seconds
Finished: SUCCESS