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Started by upstream project "BIOFORMATS-test-repo" build number 272 originally caused by: Started by upstream project "Trigger" build number 294 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1495011190014605556.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42928_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:20:39,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:20:39,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:20:39,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:39,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:20:39,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:20:39,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:20:39,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:20:39,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:39,466 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:20:39,466 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:20:39,466 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:20:39,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:20:39,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:20:39,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:20:39,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:20:39,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:20:39,731 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:20:39,731 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:20:39,731 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:20:39,731 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:20:39,731 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:20:39,732 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:20:39,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 266 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 03:20:39,742] [main] java.version = 1.8.0_342 [testng] 03:20:39,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:20:39,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:39,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_03-20-39.log] [testng] 03:20:39,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 03:20:39,793] [main] testng.directory = /data [testng] [2024-11-29 03:20:39,794] [main] testng.configDirectory = /config [testng] [2024-11-29 03:20:39,805] [main] testng.multiplier = 1.0 [testng] [2024-11-29 03:20:39,805] [main] testng.in-memory = false [testng] [2024-11-29 03:20:39,805] [main] testng.allow-missing = false [testng] [2024-11-29 03:20:39,805] [main] user.language = en [testng] [2024-11-29 03:20:39,805] [main] user.country = ${user.country} [testng] [2024-11-29 03:20:39,806] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 03:20:41,435] [main] ---------------------------------------- [testng] [2024-11-29 03:20:41,435] [main] Total files: 18 [testng] [2024-11-29 03:20:41,435] [main] Scan time: 1.629 s (90 ms/file) [testng] [2024-11-29 03:20:41,435] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 03:20:51,921] [pool-1-thread-1] Initializing /data/ascb/423.psd: [testng] 03:20:51,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:20:51,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:51,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_03-20-51.log] [testng] 03:20:51,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50d5c8ae - End of configuration. [testng] [2024-11-29 03:20:52,346] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 03:20:52,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:20:52,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:52,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_03-20-52.log] [testng] 03:20:52,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383e897e - End of configuration. [testng] [2024-11-29 03:20:52,948] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 03:20:52,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:20:52,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:52,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_03-20-52.log] [testng] 03:20:52,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e19966 - End of configuration. [testng] [2024-11-29 03:20:53,407] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] 03:20:53,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:20:53,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:53,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_03-20-53.log] [testng] 03:20:53,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@722016ab - End of configuration. [testng] [2024-11-29 03:20:53,802] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 03:20:53,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:20:53,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:53,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_03-20-53.log] [testng] 03:20:53,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@338d45d0 - End of configuration. [testng] [2024-11-29 03:20:54,222] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] 03:20:54,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:20:54,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:54,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_03-20-54.log] [testng] 03:20:54,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2796d2d0 - End of configuration. [testng] [2024-11-29 03:20:54,709] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 03:20:54,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:20:54,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:54,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_03-20-54.log] [testng] 03:20:54,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c43ef25 - End of configuration. [testng] [2024-11-29 03:20:55,128] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 03:20:55,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:20:55,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:55,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_03-20-55.log] [testng] 03:20:55,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d80dd3 - End of configuration. [testng] [2024-11-29 03:20:55,557] [pool-1-thread-5] Initializing /data/misc/smilie.psd: [testng] 03:20:55,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:20:55,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:55,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_03-20-55.log] [testng] 03:20:55,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3baa194d - End of configuration. [testng] [2024-11-29 03:20:55,989] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 03:20:55,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:20:55,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:55,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_03-20-55.log] [testng] 03:20:55,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62150b7f - End of configuration. [testng] [2024-11-29 03:20:56,424] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 03:20:56,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:20:56,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:56,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_03-20-56.log] [testng] 03:20:56,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a7ac56a - End of configuration. [testng] [2024-11-29 03:20:56,913] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 03:20:56,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:20:56,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:20:56,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_03-20-56.log] [testng] 03:20:56,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b975c30 - End of configuration. [testng] [2024-11-29 03:21:02,950] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-11-29 03:21:03,419] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] [2024-11-29 03:21:03,811] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-11-29 03:21:04,340] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] [2024-11-29 03:21:05,739] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [2024-11-29 03:21:06,168] [pool-1-thread-4] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 43 seconds Finished: SUCCESS