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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9459019178461292897.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42975_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:59:25,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:59:25,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:59:25,414 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:59:25,417 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:59:25,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:59:25,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:59:25,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:59:25,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:59:25,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:59:25,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:59:25,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:59:25,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:59:25,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:59:25,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:59:25,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:59:25,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:59:25,710 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:59:25,711 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:59:25,711 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:59:25,711 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:59:25,711 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:59:25,712 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:59:25,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 06:59:25,723] [main] java.version = 1.8.0_342 [testng] 06:59:25,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:59:25,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:25,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_06-59-25.log] [testng] 06:59:25,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 06:59:25,780] [main] testng.directory = /data [testng] [2024-11-29 06:59:25,780] [main] testng.configDirectory = /config [testng] [2024-11-29 06:59:25,793] [main] testng.multiplier = 1.0 [testng] [2024-11-29 06:59:25,794] [main] testng.in-memory = false [testng] [2024-11-29 06:59:25,794] [main] testng.allow-missing = false [testng] [2024-11-29 06:59:25,794] [main] user.language = en [testng] [2024-11-29 06:59:25,794] [main] user.country = ${user.country} [testng] [2024-11-29 06:59:25,794] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 06:59:39,951] [main] ---------------------------------------- [testng] [2024-11-29 06:59:39,951] [main] Total files: 21 [testng] [2024-11-29 06:59:39,951] [main] Scan time: 14.157 s (674 ms/file) [testng] [2024-11-29 06:59:39,952] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 07:00:01,134] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 07:00:01,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:00:01,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:01,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-00-01.log] [testng] 07:00:01,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1748bf37 - End of configuration. [testng] [2024-11-29 07:00:02,244] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 07:00:02,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:00:02,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:02,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-00-02.log] [testng] 07:00:02,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71c2a3bd - End of configuration. [testng] [2024-11-29 07:00:03,746] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 07:00:03,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:00:03,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:03,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-00-03.log] [testng] 07:00:03,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ebbac8 - End of configuration. [testng] [2024-11-29 07:00:04,402] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt: [testng] 07:00:04,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:00:04,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:04,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-00-04.log] [testng] 07:00:04,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1bd499 - End of configuration. [testng] [2024-11-29 07:00:05,801] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: [testng] 07:00:05,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:00:05,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:05,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-00-05.log] [testng] 07:00:05,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b5c702 - End of configuration. [testng] [2024-11-29 07:00:06,461] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt: [testng] 07:00:06,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:00:06,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:06,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-00-06.log] [testng] 07:00:06,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11a6b54c - End of configuration. [testng] [2024-11-29 07:00:07,046] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 07:00:07,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:00:07,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:07,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-00-07.log] [testng] 07:00:07,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f78b0cc - End of configuration. [testng] [2024-11-29 07:00:07,821] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 07:00:07,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:00:07,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:07,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-00-07.log] [testng] 07:00:07,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b025643 - End of configuration. [testng] [2024-11-29 07:00:09,294] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] 07:00:09,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:00:09,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:09,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-00-09.log] [testng] 07:00:09,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@153b8741 - End of configuration. [testng] [2024-11-29 07:00:11,968] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt: [testng] 07:00:11,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:00:11,968 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:11,969 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-00-11.log] [testng] 07:00:11,969 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42b1cf19 - End of configuration. [testng] [2024-11-29 07:00:12,961] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt: [testng] 07:00:12,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:00:12,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:12,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-00-12.log] [testng] 07:00:12,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510f8af3 - End of configuration. [testng] [2024-11-29 07:00:15,567] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt: [testng] 07:00:15,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:00:15,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:00:15,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-00-15.log] [testng] 07:00:15,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4819a602 - End of configuration. [testng] [2024-11-29 07:00:34,557] [pool-1-thread-1] Initializing /data/stefan/001_q14.txt: [testng] [2024-11-29 07:00:35,580] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] [2024-11-29 07:00:36,603] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-11-29 07:00:38,015] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt: [testng] [2024-11-29 07:00:40,286] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt: [testng] [2024-11-29 07:00:40,974] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 32 seconds Finished: SUCCESS