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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins12283612985378220553.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42997_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:14:45,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:14:45,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:14:45,996 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:14:45,998 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:14:45,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:14:45,998 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:14:45,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:14:45,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:14:45,999 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:14:46,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:14:46,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:14:46,000 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:14:46,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:14:46,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:14:46,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:14:46,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:14:46,333 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:14:46,333 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:14:46,333 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:14:46,334 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:14:46,334 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:14:46,335 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:14:46,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 07:14:46,347] [main] java.version = 1.8.0_342 [testng] 07:14:46,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:14:46,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:46,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_07-14-46.log] [testng] 07:14:46,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 07:14:46,399] [main] testng.directory = /data [testng] [2024-11-29 07:14:46,399] [main] testng.configDirectory = /config [testng] [2024-11-29 07:14:46,411] [main] testng.multiplier = 1.0 [testng] [2024-11-29 07:14:46,412] [main] testng.in-memory = false [testng] [2024-11-29 07:14:46,412] [main] testng.allow-missing = false [testng] [2024-11-29 07:14:46,412] [main] user.language = en [testng] [2024-11-29 07:14:46,412] [main] user.country = ${user.country} [testng] [2024-11-29 07:14:46,412] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 07:14:46,989] [main] ---------------------------------------- [testng] [2024-11-29 07:14:46,989] [main] Total files: 21 [testng] [2024-11-29 07:14:46,989] [main] Scan time: 0.577 s (27 ms/file) [testng] [2024-11-29 07:14:46,990] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 07:14:54,316] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 07:14:54,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:14:54,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:54,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-14-54.log] [testng] 07:14:54,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799cc14f - End of configuration. [testng] [2024-11-29 07:14:54,625] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 07:14:54,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:14:54,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:54,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-14-54.log] [testng] 07:14:54,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c16470 - End of configuration. [testng] [2024-11-29 07:14:54,879] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 07:14:54,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:14:54,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:54,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-14-54.log] [testng] 07:14:54,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2411a449 - End of configuration. [testng] [2024-11-29 07:14:55,098] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 07:14:55,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:14:55,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:55,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-14-55.log] [testng] 07:14:55,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da0b9ac - End of configuration. [testng] [2024-11-29 07:14:55,322] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 07:14:55,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:14:55,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:55,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-14-55.log] [testng] 07:14:55,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ea13ad - End of configuration. [testng] [2024-11-29 07:14:55,526] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 07:14:55,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:14:55,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:55,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-14-55.log] [testng] 07:14:55,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a1fdb85 - End of configuration. [testng] [2024-11-29 07:14:55,738] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 07:14:55,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:14:55,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:55,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-14-55.log] [testng] 07:14:55,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c3b801b - End of configuration. [testng] [2024-11-29 07:14:55,956] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 07:14:55,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:14:55,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:55,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-14-55.log] [testng] 07:14:55,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration. [testng] [2024-11-29 07:14:56,329] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 07:14:56,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:14:56,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:56,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-14-56.log] [testng] 07:14:56,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7e5e74 - End of configuration. [testng] [2024-11-29 07:14:56,706] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 07:14:56,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:14:56,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:56,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-14-56.log] [testng] 07:14:56,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67137a57 - End of configuration. [testng] [2024-11-29 07:14:56,982] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 07:14:56,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:14:56,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:56,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-14-56.log] [testng] 07:14:56,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33e7ffb8 - End of configuration. [testng] [2024-11-29 07:14:57,194] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 07:14:57,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:14:57,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:14:57,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-14-57.log] [testng] 07:14:57,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@777111c7 - End of configuration. [testng] [2024-11-29 07:15:02,253] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] [2024-11-29 07:15:02,582] [pool-1-thread-4] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-11-29 07:15:02,821] [pool-1-thread-1] Initializing /data/samples/CBW8.TGA: [testng] [2024-11-29 07:15:02,985] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] [2024-11-29 07:15:03,192] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] [2024-11-29 07:15:03,496] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2024-11-29 07:15:03,821] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] [2024-11-29 07:15:04,147] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA: [testng] [2024-11-29 07:15:04,442] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 seconds Finished: SUCCESS