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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins10250317020075346778.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43001_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:17:37,056 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:17:37,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:17:37,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:17:37,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:17:37,060 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:17:37,060 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:17:37,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:17:37,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:17:37,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:17:37,061 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:17:37,061 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:17:37,061 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:17:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:17:37,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:17:37,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:17:37,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:17:37,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:17:37,354 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:17:37,354 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:17:37,354 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:17:37,354 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:17:37,355 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:17:37,355 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 07:17:37,366] [main] java.version = 1.8.0_342 [testng] 07:17:37,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:17:37,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:17:37,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_07-17-37.log] [testng] 07:17:37,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 07:17:37,422] [main] testng.directory = /data [testng] [2024-11-29 07:17:37,423] [main] testng.configDirectory = /config [testng] [2024-11-29 07:17:37,435] [main] testng.multiplier = 1.0 [testng] [2024-11-29 07:17:37,436] [main] testng.in-memory = false [testng] [2024-11-29 07:17:37,436] [main] testng.allow-missing = false [testng] [2024-11-29 07:17:37,436] [main] user.language = en [testng] [2024-11-29 07:17:37,436] [main] user.country = ${user.country} [testng] [2024-11-29 07:17:37,436] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 07:18:00,665] [main] ---------------------------------------- [testng] [2024-11-29 07:18:00,665] [main] Total files: 259 [testng] [2024-11-29 07:18:00,665] [main] Scan time: 23.229 s (89 ms/file) [testng] [2024-11-29 07:18:00,665] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 07:30:20,244] [pool-1-thread-1] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 07:30:20,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:30:20,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:20,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-30-20.log] [testng] 07:30:20,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@674ed281 - End of configuration. [testng] [2024-11-29 07:30:21,892] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] 07:30:21,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:30:21,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:21,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-30-21.log] [testng] 07:30:21,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@752b2115 - End of configuration. [testng] [2024-11-29 07:30:22,564] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 07:30:22,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:30:22,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:22,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-30-22.log] [testng] 07:30:22,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df89612 - End of configuration. [testng] [2024-11-29 07:30:26,484] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] 07:30:26,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:30:26,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:26,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-30-26.log] [testng] 07:30:26,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cd34045 - End of configuration. [testng] [2024-11-29 07:30:27,085] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] 07:30:27,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:30:27,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:27,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-30-27.log] [testng] 07:30:27,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f8180e0 - End of configuration. [testng] [2024-11-29 07:30:27,412] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 07:30:27,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:30:27,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:27,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-30-27.log] [testng] 07:30:27,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@746995b9 - End of configuration. [testng] [2024-11-29 07:30:27,721] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] 07:30:27,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:30:27,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:27,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-30-27.log] [testng] 07:30:27,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28560e30 - End of configuration. [testng] [2024-11-29 07:30:37,492] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] 07:30:37,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:30:37,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:37,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-30-37.log] [testng] 07:30:37,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eb8bfbf - End of configuration. [testng] [2024-11-29 07:30:38,368] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 07:30:38,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:30:38,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:38,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-30-38.log] [testng] 07:30:38,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ede70e - End of configuration. [testng] [2024-11-29 07:30:39,176] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] 07:30:39,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:30:39,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:39,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-30-39.log] [testng] 07:30:39,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c296142 - End of configuration. [testng] [2024-11-29 07:30:47,310] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif: [testng] 07:30:47,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:30:47,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:47,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-30-47.log] [testng] 07:30:47,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d3b177 - End of configuration. [testng] [2024-11-29 07:30:48,297] [pool-1-thread-2] Initializing /data/sten/01.oib: [testng] 07:30:48,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:30:48,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:30:48,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-30-48.log] [testng] 07:30:48,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ece0043 - End of configuration. [testng] [2024-11-29 07:30:56,043] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-29 07:30:56,274] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-29 07:30:57,594] [pool-1-thread-2] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-29 07:31:00,793] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-29 07:31:06,411] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-29 07:31:07,103] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-29 07:31:08,769] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-11-29 07:31:10,378] [pool-1-thread-10] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-29 07:31:12,350] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-29 07:31:15,517] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-29 07:31:18,007] [pool-1-thread-10] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-29 07:32:24,405] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-29 07:32:26,025] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-29 07:32:48,155] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-29 07:32:48,971] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-29 07:32:53,202] [pool-1-thread-9] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-29 07:32:55,550] [pool-1-thread-8] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-29 07:32:57,770] [pool-1-thread-3] Initializing /data/monica/Image0056.oif: [testng] [2024-11-29 07:32:58,945] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-29 07:33:01,973] [pool-1-thread-9] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-29 07:33:04,710] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-29 07:33:09,564] [pool-1-thread-8] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-29 07:33:12,453] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-29 07:33:20,161] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-11-29 07:33:25,602] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-29 07:33:44,583] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-29 07:34:05,703] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-29 07:34:47,009] [pool-1-thread-12] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-29 07:34:55,041] [pool-1-thread-12] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-29 07:35:01,484] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-29 07:35:08,158] [pool-1-thread-12] Initializing /data/glen/Image0002.oif: [testng] [2024-11-29 07:40:58,382] [pool-1-thread-2] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-29 07:41:02,911] [pool-1-thread-2] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-29 07:41:09,388] [pool-1-thread-2] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-29 07:42:42,686] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-29 07:42:48,480] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2024-11-29 07:43:05,092] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-29 07:43:21,466] [pool-1-thread-3] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-29 07:43:23,314] [pool-1-thread-3] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-29 07:43:31,520] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-29 07:43:36,775] [pool-1-thread-3] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-29 07:43:41,634] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-29 07:43:48,198] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-29 07:43:54,158] [pool-1-thread-1] Initializing /data/johannes/step2.bmp: [testng] [2024-11-29 07:43:55,435] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-29 07:43:56,793] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-29 07:44:00,865] [pool-1-thread-3] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-29 07:44:05,856] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-29 07:45:17,670] [pool-1-thread-2] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-29 07:45:23,555] [pool-1-thread-2] Initializing /data/david/Image0016.oif: [testng] [2024-11-29 07:47:04,808] [pool-1-thread-2] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-29 07:47:27,203] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-29 07:47:34,861] [pool-1-thread-3] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-29 07:47:58,914] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-29 07:48:33,068] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-29 07:48:40,677] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-29 07:48:50,204] [pool-1-thread-3] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-29 07:49:00,941] [pool-1-thread-3] Initializing /data/karl/Image0009.oib: [testng] [2024-11-29 07:49:07,738] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-29 07:49:16,414] [pool-1-thread-3] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-29 07:49:40,489] [pool-1-thread-8] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-29 07:49:47,239] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-29 07:49:55,389] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-29 07:50:01,801] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-29 07:51:02,388] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-11-29 07:51:15,253] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-29 07:51:24,395] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-29 07:51:35,739] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-29 07:51:50,297] [pool-1-thread-1] Initializing /data/brian/FLIP.oib: [testng] [2024-11-29 07:52:04,629] [pool-1-thread-1] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-29 07:52:15,465] [pool-1-thread-1] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-29 07:52:24,894] [pool-1-thread-1] Initializing /data/simon/never_worked.oib: [testng] [2024-11-29 07:52:34,548] [pool-1-thread-1] Initializing /data/johannes/step1.bmp: [testng] [2024-11-29 07:52:39,850] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-29 07:52:56,823] [pool-1-thread-1] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-29 07:53:10,140] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-29 07:53:24,233] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-29 07:54:43,972] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-29 07:54:57,166] [pool-1-thread-7] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-29 07:55:10,735] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-29 07:55:23,089] [pool-1-thread-7] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-29 07:55:35,741] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-29 07:55:55,530] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-29 07:56:09,222] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-29 07:56:20,709] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-29 07:56:32,376] [pool-1-thread-4] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-29 07:56:45,036] [pool-1-thread-4] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-29 07:57:40,368] [pool-1-thread-7] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-29 08:00:57,255] [pool-1-thread-4] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-29 08:01:01,491] [pool-1-thread-12] Initializing /data/david/Image0016.oib: [testng] [2024-11-29 08:01:09,279] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-29 08:01:13,177] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-29 08:01:56,174] [pool-1-thread-4] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-29 08:02:07,053] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-29 08:02:42,130] [pool-1-thread-9] Initializing /data/allan/62909#1.oib: [testng] [2024-11-29 08:02:51,644] [pool-1-thread-9] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-29 08:06:21,915] [pool-1-thread-5] Initializing /data/glen/simulstack.oif: [testng] [2024-11-29 08:07:59,187] [pool-1-thread-6] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-29 08:08:10,225] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-29 08:12:15,434] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-29 08:12:22,617] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-29 08:12:49,155] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-29 08:12:55,430] [pool-1-thread-11] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-29 08:13:23,870] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-29 08:15:17,605] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-29 08:20:50,676] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-29 08:20:58,864] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-29 08:21:05,099] [pool-1-thread-4] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-29 08:21:12,798] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-29 08:21:18,896] [pool-1-thread-4] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-29 08:21:28,553] [pool-1-thread-4] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-29 08:21:36,439] [pool-1-thread-4] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-29 08:27:39,167] [pool-1-thread-5] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-29 08:28:23,373] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-29 08:28:28,722] [pool-1-thread-5] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-29 08:29:03,123] [pool-1-thread-1] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-29 08:29:08,765] [pool-1-thread-1] Initializing /data/johannes/step4.bmp: [testng] [2024-11-29 08:29:11,438] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-29 08:29:14,408] [pool-1-thread-1] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-29 08:29:23,536] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-11-29 08:29:27,139] [pool-1-thread-1] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-29 08:29:33,686] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-29 08:29:50,717] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-29 08:30:03,170] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-29 08:30:12,994] [pool-1-thread-12] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-29 08:31:26,517] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-29 08:31:36,995] [pool-1-thread-1] Initializing /data/jae/Image0001.oib: [testng] [2024-11-29 08:31:39,221] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-29 08:31:47,526] [pool-1-thread-1] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-29 08:33:01,058] [pool-1-thread-3] Initializing /data/marc/V0606L.oib: [testng] [2024-11-29 08:33:21,959] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-29 08:33:31,224] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 09:18:41,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:18:41,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:18:41,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_09-18-41.log] [testng] 09:18:41,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c37c02f - End of configuration. [testng] 10:00:36,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:00:36,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:00:36,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_10-00-36.log] [testng] 10:00:36,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e557eb4 - End of configuration. [testng] 10:09:06,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:09:06,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:09:06,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_10-09-06.log] [testng] 10:09:06,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82b9e0c - End of configuration. [testng] 10:21:08,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:21:08,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:21:08,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_10-21-08.log] [testng] 10:21:08,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3212ff1b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 183 minutes 36 seconds Finished: SUCCESS