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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5326448777380302445.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43010_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:27:45,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:27:45,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 07:27:45,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:27:45,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:27:45,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:27:45,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:27:45,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:27:45,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:27:45,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:27:45,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:27:45,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:27:45,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:27:45,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:27:45,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:27:45,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:27:45,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:27:45,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:27:45,972 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:27:45,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:27:45,973 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:27:45,973 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 07:27:45,974 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 07:27:45,974 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 07:27:45,983] [main] java.version = 1.8.0_342 [testng] 07:27:45,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:27:45,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:46,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_07-27-46.log] [testng] 07:27:46,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 07:27:46,033] [main] testng.directory = /data [testng] [2024-11-29 07:27:46,033] [main] testng.configDirectory = /config [testng] [2024-11-29 07:27:46,044] [main] testng.multiplier = 1.0 [testng] [2024-11-29 07:27:46,045] [main] testng.in-memory = false [testng] [2024-11-29 07:27:46,045] [main] testng.allow-missing = false [testng] [2024-11-29 07:27:46,045] [main] user.language = en [testng] [2024-11-29 07:27:46,045] [main] user.country = ${user.country} [testng] [2024-11-29 07:27:46,045] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 07:27:46,685] [main] ---------------------------------------- [testng] [2024-11-29 07:27:46,685] [main] Total files: 25 [testng] [2024-11-29 07:27:46,685] [main] Scan time: 0.64 s (25 ms/file) [testng] [2024-11-29 07:27:46,685] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 07:27:53,401] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 07:27:53,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:27:53,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:53,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_07-27-53.log] [testng] 07:27:53,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62851ea - End of configuration. [testng] [2024-11-29 07:27:53,657] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 07:27:53,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:27:53,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:53,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_07-27-53.log] [testng] 07:27:53,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a61f29 - End of configuration. [testng] [2024-11-29 07:27:53,870] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 07:27:53,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:27:53,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:53,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_07-27-53.log] [testng] 07:27:53,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b5285c - End of configuration. [testng] [2024-11-29 07:27:54,094] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 07:27:54,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:27:54,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:54,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_07-27-54.log] [testng] 07:27:54,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483a855 - End of configuration. [testng] [2024-11-29 07:27:54,319] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 07:27:54,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:27:54,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:54,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_07-27-54.log] [testng] 07:27:54,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4166ef75 - End of configuration. [testng] [2024-11-29 07:27:54,547] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 07:27:54,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:27:54,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:54,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_07-27-54.log] [testng] 07:27:54,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@613b46cd - End of configuration. [testng] [2024-11-29 07:27:54,576] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 07:27:54,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:27:54,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:54,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_07-27-54.log] [testng] 07:27:54,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3176f977 - End of configuration. [testng] [2024-11-29 07:27:54,791] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 07:27:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:27:54,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:54,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_07-27-54.log] [testng] 07:27:54,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26450633 - End of configuration. [testng] [2024-11-29 07:27:55,002] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 07:27:55,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:27:55,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:55,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_07-27-55.log] [testng] 07:27:55,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bd55a2 - End of configuration. [testng] [2024-11-29 07:27:55,212] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 07:27:55,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:27:55,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:55,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_07-27-55.log] [testng] 07:27:55,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a818e - End of configuration. [testng] [2024-11-29 07:27:55,588] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 07:27:55,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:27:55,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:55,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_07-27-55.log] [testng] 07:27:55,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@235bfa3d - End of configuration. [testng] [2024-11-29 07:27:55,965] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 07:27:55,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:27:55,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:55,966 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_07-27-55.log] [testng] 07:27:55,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74c8119f - End of configuration. [testng] [2024-11-29 07:27:58,885] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-29 07:28:00,895] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-29 07:28:01,298] [pool-1-thread-6] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-29 07:28:01,674] [pool-1-thread-9] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-29 07:28:02,103] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-29 07:28:02,641] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: [testng] [2024-11-29 07:28:03,056] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-29 07:28:03,449] [pool-1-thread-10] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-11-29 07:28:03,794] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-29 07:28:03,973] [pool-1-thread-7] Initializing /data/misc/planet.pict: [testng] [2024-11-29 07:28:04,170] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-11-29 07:28:04,461] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-29 07:28:06,875] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS