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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1467870456345086561.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43044_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:39:13,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:39:13,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 08:39:13,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:39:13,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:39:13,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:39:13,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:39:13,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:39:13,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:39:13,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:39:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:39:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:39:13,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:39:13,624 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:39:13,624 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:39:13,625 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:39:13,625 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 08:39:13,626 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 08:39:13,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 295 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 08:39:13,635] [main] java.version = 1.8.0_342 [testng] 08:39:13,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:39:13,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:39:13,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_08-39-13.log] [testng] 08:39:13,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 08:39:13,706] [main] testng.directory = /data [testng] [2024-11-29 08:39:13,707] [main] testng.configDirectory = /config [testng] [2024-11-29 08:39:13,718] [main] testng.multiplier = 1.0 [testng] [2024-11-29 08:39:13,719] [main] testng.in-memory = false [testng] [2024-11-29 08:39:13,719] [main] testng.allow-missing = false [testng] [2024-11-29 08:39:13,719] [main] user.language = en [testng] [2024-11-29 08:39:13,719] [main] user.country = ${user.country} [testng] [2024-11-29 08:39:13,719] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 08:52:45,178] [main] ---------------------------------------- [testng] [2024-11-29 08:52:45,179] [main] Total files: 7329 [testng] [2024-11-29 08:52:45,179] [main] Scan time: 811.459 s (110 ms/file) [testng] [2024-11-29 08:52:45,179] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 09:09:03,970] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 09:09:03,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:09:03,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:03,972 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_09-09-03.log] [testng] 09:09:03,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@422dcc9d - End of configuration. [testng] [2024-11-29 09:09:05,634] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 09:09:05,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:09:05,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:05,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_09-09-05.log] [testng] 09:09:05,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@627db470 - End of configuration. [testng] [2024-11-29 09:09:07,432] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 09:09:07,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:09:07,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:07,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_09-09-07.log] [testng] 09:09:07,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a62ea6c - End of configuration. [testng] [2024-11-29 09:09:07,747] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 09:09:07,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:09:07,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:07,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_09-09-07.log] [testng] 09:09:07,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a20798 - End of configuration. [testng] [2024-11-29 09:09:09,658] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 09:09:09,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:09:09,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:09,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_09-09-09.log] [testng] 09:09:09,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2323d5 - End of configuration. [testng] [2024-11-29 09:09:11,427] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 09:09:11,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:09:11,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:11,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_09-09-11.log] [testng] 09:09:11,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763ece9f - End of configuration. [testng] [2024-11-29 09:09:13,374] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 09:09:13,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:09:13,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:13,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_09-09-13.log] [testng] 09:09:13,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61152e1e - End of configuration. [testng] [2024-11-29 09:09:15,254] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 09:09:15,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:09:15,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:15,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_09-09-15.log] [testng] 09:09:15,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44007955 - End of configuration. [testng] [2024-11-29 09:09:17,045] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 09:09:17,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:09:17,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:17,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_09-09-17.log] [testng] 09:09:17,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a25a50 - End of configuration. [testng] [2024-11-29 09:09:19,058] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 09:09:19,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:09:19,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:19,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_09-09-19.log] [testng] 09:09:19,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49d11add - End of configuration. [testng] [2024-11-29 09:09:20,958] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 09:09:20,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:09:20,958 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:20,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_09-09-20.log] [testng] 09:09:20,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54f1e97d - End of configuration. [testng] [2024-11-29 09:09:30,003] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 09:09:30,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:09:30,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:09:30,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_09-09-30.log] [testng] 09:09:30,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650a54d3 - End of configuration. [testng] [2024-11-29 09:09:38,404] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-11-29 09:09:58,837] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-11-29 09:10:00,525] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] [2024-11-29 09:10:46,195] [pool-1-thread-5] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-11-29 09:10:48,543] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:10:50,850] [pool-1-thread-2] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-11-29 09:10:53,173] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-11-29 09:10:55,178] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-11-29 09:10:57,054] [pool-1-thread-10] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-11-29 09:11:05,394] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-11-29 09:11:08,103] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-11-29 09:11:11,830] [pool-1-thread-12] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-11-29 09:11:19,622] [pool-1-thread-9] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-11-29 09:11:22,768] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-11-29 09:11:28,410] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-11-29 09:11:31,928] [pool-1-thread-5] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-11-29 09:11:41,156] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-11-29 09:11:50,290] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-11-29 09:11:54,313] [pool-1-thread-4] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-11-29 09:11:57,163] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-11-29 09:12:00,822] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-11-29 09:12:04,776] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-11-29 09:12:08,144] [pool-1-thread-8] Used files list does not include base file [testng] [2024-11-29 09:12:13,470] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-11-29 09:12:18,339] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-29 09:12:21,354] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 09:12:23,055] [pool-1-thread-7] Initializing /data/cumol-test-series/23.001: [testng] [2024-11-29 09:12:27,220] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-11-29 09:12:31,780] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 09:12:42,640] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-11-29 09:12:46,258] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-29 09:12:46,296] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-11-29 09:12:54,063] [pool-1-thread-10] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-11-29 09:12:56,332] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-11-29 09:12:59,548] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-29 09:13:01,111] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-11-29 09:13:07,953] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-11-29 09:13:10,491] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 09:13:18,054] [pool-1-thread-10] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-11-29 09:13:27,638] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-29 09:13:31,051] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-29 09:13:31,095] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-11-29 09:13:53,852] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-11-29 09:13:56,862] [pool-1-thread-3] Used files list does not include base file [testng] [2024-11-29 09:14:06,379] [pool-1-thread-7] Initializing /data/ascb/mt aim.tif: [testng] [2024-11-29 09:14:09,005] [pool-1-thread-8] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-11-29 09:14:13,264] [pool-1-thread-2] Initializing /data/qa-16915/m-02.tif: [testng] [2024-11-29 09:14:19,654] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2024-11-29 09:14:24,672] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-29 09:14:29,793] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-11-29 09:14:42,940] [pool-1-thread-8] Initializing /data/josh/2101to600f.stk: [testng] [2024-11-29 09:15:14,100] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-29 09:15:17,560] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-11-29 09:15:25,271] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-11-29 09:15:28,647] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-11-29 09:15:40,197] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 09:15:48,267] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-11-29 09:15:50,459] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-11-29 09:16:02,039] [pool-1-thread-12] Initializing /data/dave/Z Series.stk: [testng] [2024-11-29 09:16:09,095] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-29 09:16:18,010] [pool-1-thread-3] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-11-29 09:16:25,275] [pool-1-thread-12] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-11-29 09:16:28,219] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-11-29 09:16:33,850] [pool-1-thread-2] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-11-29 09:16:37,112] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-11-29 09:16:46,332] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-11-29 09:16:48,449] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-11-29 09:16:55,599] [pool-1-thread-4] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-11-29 09:17:49,085] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-11-29 09:17:51,132] [pool-1-thread-5] Used files list does not include base file [testng] [2024-11-29 09:17:52,427] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:17:55,326] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:17:58,234] [pool-1-thread-11] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-11-29 09:18:01,068] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-11-29 09:18:03,435] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-11-29 09:18:06,943] [pool-1-thread-1] Used files list does not include base file [testng] [2024-11-29 09:18:13,017] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-11-29 09:18:20,230] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-11-29 09:18:27,212] [pool-1-thread-5] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-11-29 09:18:29,160] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-11-29 09:18:31,971] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:18:33,981] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-11-29 09:19:03,434] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2024-11-29 09:19:13,659] [pool-1-thread-2] Initializing /data/samples/zseries.stk: [testng] [2024-11-29 09:19:15,376] [pool-1-thread-6] Initializing /data/grant/X.STK: [testng] [2024-11-29 09:19:21,556] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-11-29 09:19:23,528] [pool-1-thread-10] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-11-29 09:19:30,113] [pool-1-thread-2] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-11-29 09:19:39,300] [pool-1-thread-8] Initializing /data/samples/10xcalib.tif: [testng] [2024-11-29 09:19:45,109] [pool-1-thread-6] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-11-29 09:19:50,541] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-11-29 09:19:57,876] [pool-1-thread-8] Initializing /data/samples/diatoms3d.stk: [testng] [2024-11-29 09:20:01,981] [pool-1-thread-6] Initializing /data/david/tl4.tif: [testng] [2024-11-29 09:20:04,461] [pool-1-thread-1] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-11-29 09:20:08,911] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-11-29 09:20:13,508] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2024-11-29 09:20:15,733] [pool-1-thread-8] Initializing /data/alex/Selected FITC.stk: [testng] [2024-11-29 09:20:19,119] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-11-29 09:20:23,881] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-11-29 09:20:25,820] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-11-29 09:20:28,526] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 09:20:33,457] [pool-1-thread-6] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-11-29 09:20:37,998] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-11-29 09:20:46,622] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:20:48,816] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-11-29 09:20:50,703] [pool-1-thread-2] Initializing /data/ascb/golgi marker.tif: [testng] [2024-11-29 09:20:52,334] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-11-29 09:20:58,785] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-11-29 09:21:05,725] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-11-29 09:21:09,026] [pool-1-thread-9] Used files list does not include base file [testng] [2024-11-29 09:21:09,068] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-11-29 09:21:11,668] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-11-29 09:21:17,580] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-11-29 09:21:21,343] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-11-29 09:21:30,114] [pool-1-thread-2] Initializing /data/aaron/metamorph.stk: [testng] [2024-11-29 09:21:33,062] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-11-29 09:21:34,871] [pool-1-thread-10] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-11-29 09:21:37,072] [pool-1-thread-5] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-11-29 09:21:39,150] [pool-1-thread-4] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-11-29 09:21:41,865] [pool-1-thread-12] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-11-29 09:24:14,864] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:24:17,154] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-11-29 09:24:37,096] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-11-29 09:24:57,016] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-11-29 09:25:10,903] [pool-1-thread-8] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-11-29 09:25:17,969] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-11-29 09:25:22,028] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-11-29 09:25:26,253] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-11-29 09:25:28,062] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-11-29 09:25:35,962] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-11-29 09:25:41,214] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-11-29 09:25:43,835] [pool-1-thread-6] Used files list does not include base file [testng] [2024-11-29 09:25:48,690] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-11-29 09:25:52,905] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-11-29 09:26:08,644] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-11-29 09:26:40,575] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-11-29 09:26:46,219] [pool-1-thread-9] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-11-29 09:26:51,615] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-11-29 09:26:54,385] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-29 09:26:59,345] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-11-29 09:27:02,799] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-29 09:27:07,268] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-11-29 09:27:10,335] [pool-1-thread-12] Used files list does not include base file [testng] [2024-11-29 09:27:18,815] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-11-29 09:27:25,718] [pool-1-thread-4] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-11-29 09:27:33,770] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-11-29 09:27:42,680] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-11-29 09:27:48,807] [pool-1-thread-6] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-11-29 09:27:55,012] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-29 09:28:05,619] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-11-29 09:28:10,931] [pool-1-thread-2] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-11-29 09:28:15,739] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-11-29 09:28:21,852] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-11-29 09:28:23,962] [pool-1-thread-4] Used files list does not include base file [testng] [2024-11-29 09:28:26,954] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-11-29 09:28:31,178] [pool-1-thread-10] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-11-29 09:28:37,055] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-11-29 09:29:06,512] [pool-1-thread-2] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-11-29 09:29:08,631] [pool-1-thread-11] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-11-29 09:29:08,916] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-11-29 09:29:15,961] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-11-29 09:29:22,105] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-11-29 09:29:24,584] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-11-29 09:29:33,727] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-11-29 09:29:44,155] [pool-1-thread-2] Initializing /data/jae/RGB_s34.tif: [testng] [2024-11-29 09:29:53,472] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-11-29 09:29:58,188] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-11-29 09:30:00,899] [pool-1-thread-11] Used files list does not include base file [testng] [2024-11-29 09:30:07,126] [pool-1-thread-4] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-11-29 09:30:08,997] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-11-29 09:30:24,132] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-11-29 09:30:39,688] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:30:46,382] [pool-1-thread-2] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-11-29 09:30:56,816] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-11-29 09:31:10,619] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-11-29 09:31:36,861] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-11-29 09:31:47,944] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:32:21,741] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-11-29 09:32:23,558] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-11-29 09:32:36,746] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-11-29 09:32:39,228] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-11-29 09:32:51,487] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2024-11-29 09:32:53,153] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-11-29 09:32:54,896] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-11-29 09:33:04,385] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-11-29 09:33:08,330] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-11-29 09:33:10,325] [pool-1-thread-4] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-11-29 09:33:18,381] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-11-29 09:33:22,338] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-11-29 09:33:24,664] [pool-1-thread-4] Used files list does not include base file [testng] 13:02:55,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:02:55,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:02:55,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_13-02-55.log] [testng] 13:02:55,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d96549 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 263 minutes 47 seconds Finished: SUCCESS