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Started by upstream project "BIOFORMATS-test-repo" build number 273 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7673872881419270778.sh + '[' png = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43066_merge_ci -v /uod/idr/repos/curated/png:/data -v /uod/idr-scratch/merge-ci/curated/png:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:57:26,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:57:26,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:57:26,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:57:26,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:57:26,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:57:26,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:57:26,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:57:26,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:57:26,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:57:26,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:57:26,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:57:26,636 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:57:26,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:57:26,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:57:26,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:57:26,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:57:26,876 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:57:26,876 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:57:26,876 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:57:26,877 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:57:26,877 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:57:26,877 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:57:26,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 243 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 09:57:26,887] [main] java.version = 1.8.0_342 [testng] 09:57:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:57:26,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:57:26,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_09-57-26.log] [testng] 09:57:26,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 09:57:26,935] [main] testng.directory = /data [testng] [2024-11-29 09:57:26,935] [main] testng.configDirectory = /config [testng] [2024-11-29 09:57:26,946] [main] testng.multiplier = 1.0 [testng] [2024-11-29 09:57:26,946] [main] testng.in-memory = false [testng] [2024-11-29 09:57:26,946] [main] testng.allow-missing = false [testng] [2024-11-29 09:57:26,946] [main] user.language = en [testng] [2024-11-29 09:57:26,946] [main] user.country = ${user.country} [testng] [2024-11-29 09:57:26,946] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 09:57:33,996] [main] ---------------------------------------- [testng] [2024-11-29 09:57:33,996] [main] Total files: 152 [testng] [2024-11-29 09:57:33,996] [main] Scan time: 7.05 s (46 ms/file) [testng] [2024-11-29 09:57:33,996] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 150 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 09:57:59,860] [pool-1-thread-1] Initializing /data/public/user-11/dataset-user-11/user-11 02 TEST.png: [testng] 09:57:59,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:57:59,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:57:59,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_09-57-59.log] [testng] 09:57:59,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e1861d - End of configuration. [testng] [2024-11-29 09:57:59,930] [pool-1-thread-12] Initializing /data/curtis/rgba8_bk.png: [testng] 09:57:59,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:57:59,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:57:59,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_09-57-59.log] [testng] 09:57:59,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57bea848 - End of configuration. [testng] [2024-11-29 09:57:59,990] [pool-1-thread-11] Initializing /data/public/user-6/dataset-user-6/user-6 02 TEST.png: [testng] 09:57:59,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:57:59,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:57:59,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_09-57-59.log] [testng] 09:57:59,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76304ad5 - End of configuration. [testng] [2024-11-29 09:58:00,057] [pool-1-thread-10] Initializing /data/public/user-11/Pdataset-user-11/user-11 07 TEST.png: [testng] 09:58:00,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:58:00,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_09-58-00.log] [testng] 09:58:00,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77c3db16 - End of configuration. [testng] [2024-11-29 09:58:00,125] [pool-1-thread-9] Initializing /data/public/user-4/Pdataset-user-4/user-4 07 TEST.png: [testng] 09:58:00,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:58:00,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_09-58-00.log] [testng] 09:58:00,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9117c5 - End of configuration. [testng] [2024-11-29 09:58:00,187] [pool-1-thread-8] Initializing /data/public/user-6/dataset-user-6/user-6 04 TEST.png: [testng] 09:58:00,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:58:00,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_09-58-00.log] [testng] 09:58:00,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c6507b - End of configuration. [testng] [2024-11-29 09:58:00,255] [pool-1-thread-7] Initializing /data/public/user-12/Pdataset-user-12/user-12 08 TEST.png: [testng] 09:58:00,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:58:00,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_09-58-00.log] [testng] 09:58:00,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fa98c2 - End of configuration. [testng] [2024-11-29 09:58:00,323] [pool-1-thread-6] Initializing /data/public/user-11/user-11 09 TEST.png: [testng] 09:58:00,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:58:00,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,324 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_09-58-00.log] [testng] 09:58:00,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b70863d - End of configuration. [testng] [2024-11-29 09:58:00,385] [pool-1-thread-5] Initializing /data/public/user-11/dataset-user-11/user-11 01 TEST.png: [testng] 09:58:00,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:58:00,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_09-58-00.log] [testng] 09:58:00,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5e3664 - End of configuration. [testng] [2024-11-29 09:58:00,448] [pool-1-thread-4] Initializing /data/qa-11038/BGEMG.png: [testng] 09:58:00,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:58:00,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_09-58-00.log] [testng] 09:58:00,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@608a1b67 - End of configuration. [testng] [2024-11-29 09:58:00,516] [pool-1-thread-3] Initializing /data/samples/Cats.png: [testng] 09:58:00,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:58:00,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_09-58-00.log] [testng] 09:58:00,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5daabd - End of configuration. [testng] [2024-11-29 09:58:00,585] [pool-1-thread-2] Initializing /data/public/user-7/dataset-user-7/user-7 01 TEST.png: [testng] 09:58:00,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:58:00,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:58:00,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_09-58-00.log] [testng] 09:58:00,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565d1266 - End of configuration. [testng] [2024-11-29 09:58:03,188] [pool-1-thread-12] Initializing /data/public/user-4/dataset-user-4/user-4 04 TEST.png: [testng] [2024-11-29 09:58:03,436] [pool-1-thread-4] Initializing /data/public/user-11/Pdataset-user-11/user-11 06 TEST.png: [testng] [2024-11-29 09:58:03,615] [pool-1-thread-11] Initializing /data/public/user-8/dataset-user-8/user-8 03 TEST.png: [testng] [2024-11-29 09:58:03,672] [pool-1-thread-7] Initializing /data/public/user-4/Pdataset-user-4/user-4 06 TEST.png: [testng] [2024-11-29 09:58:03,731] [pool-1-thread-1] Initializing /data/public/user-8/user-8 09 TEST.png: [testng] [2024-11-29 09:58:03,808] [pool-1-thread-5] Initializing /data/public/user-6/dataset-user-6/user-6 03 TEST.png: [testng] [2024-11-29 09:58:03,867] [pool-1-thread-9] Initializing /data/public/user-5/dataset-user-5/user-5 01 TEST.png: [testng] [2024-11-29 09:58:03,925] [pool-1-thread-6] Initializing /data/public/user-2/Pdataset-user-2/user-2 06 TEST.png: [testng] [2024-11-29 09:58:03,988] [pool-1-thread-8] Initializing /data/stephane/save.ome.tif: [testng] [2024-11-29 09:58:05,208] [pool-1-thread-10] Initializing /data/public/user-8/dataset-user-8/user-8 01 TEST.png: [testng] [2024-11-29 09:58:05,263] [pool-1-thread-3] Initializing /data/public/user-7/Pdataset-user-7/user-7 07 TEST.png: [testng] [2024-11-29 09:58:05,319] [pool-1-thread-2] Initializing /data/public/user-3/Pdataset-user-3/user-3 05 TEST.png: [testng] [2024-11-29 09:58:05,899] [pool-1-thread-12] Initializing /data/public/user-6/dataset-user-6/user-6 01 TEST.png: [testng] [2024-11-29 09:58:07,462] [pool-1-thread-11] Initializing /data/public/will/WesternBlots/Hela-frctns-DM1a-5.12.png: [testng] [2024-11-29 09:58:07,523] [pool-1-thread-1] Initializing /data/public/user-6/user-6 10 TEST.png: [testng] [2024-11-29 09:58:07,583] [pool-1-thread-10] Initializing /data/public/user-10/dataset-user-10/user-10 01 TEST.png: [testng] [2024-11-29 09:58:07,644] [pool-1-thread-4] Initializing /data/public/user-4/dataset-user-4/user-4 02 TEST.png: [testng] [2024-11-29 09:58:07,701] [pool-1-thread-7] Initializing /data/public/user-7/dataset-user-7/user-7 02 TEST.png: [testng] [2024-11-29 09:58:07,758] [pool-1-thread-3] Initializing /data/public/user-1/dataset-user-1/user-1 03 TEST.png: [testng] [2024-11-29 09:58:07,817] [pool-1-thread-9] Initializing /data/curtis/toucan.png: [testng] [2024-11-29 09:58:07,872] [pool-1-thread-2] Initializing /data/public/user-10/user-10 09 TEST.png: [testng] [2024-11-29 09:58:07,928] [pool-1-thread-6] Initializing /data/public/user-2/user-2 10 TEST.png: [testng] [2024-11-29 09:58:07,984] [pool-1-thread-5] Initializing /data/public/user-8/Pdataset-user-8/user-8 05 TEST.png: [testng] [2024-11-29 09:58:08,548] [pool-1-thread-12] Initializing /data/petr/4.4.5 version works fine.png: [testng] [2024-11-29 09:58:10,145] [pool-1-thread-9] Initializing /data/public/user-9/user-9 10 TEST.png: [testng] [2024-11-29 09:58:10,207] [pool-1-thread-3] Initializing /data/stephane/test.tiff: [testng] [2024-11-29 09:58:12,105] [pool-1-thread-10] Initializing /data/public/user-6/Pdataset-user-6/user-6 06 TEST.png: [testng] [2024-11-29 09:58:12,171] [pool-1-thread-1] Initializing /data/public/user-1/Pdataset-user-1/user-1 06 TEST.png: [testng] [2024-11-29 09:58:12,234] [pool-1-thread-6] Initializing /data/public/user-2/dataset-user-2/user-2 01 TEST.png: [testng] [2024-11-29 09:58:12,296] [pool-1-thread-2] Initializing /data/public/user-1/Pdataset-user-1/user-1 07 TEST.png: [testng] [2024-11-29 09:58:12,349] [pool-1-thread-7] Initializing /data/public/will/WesternBlots/BillE-IPbuffer-IPs-18-21.1.png: [testng] [2024-11-29 09:58:12,404] [pool-1-thread-4] Initializing /data/public/user-9/dataset-user-9/user-9 01 TEST.png: [testng] [2024-11-29 09:58:12,487] [pool-1-thread-5] Initializing /data/public/user-7/user-7 09 TEST.png: [testng] [2024-11-29 09:58:12,660] [pool-1-thread-11] Initializing /data/public/user-4/Pdataset-user-4/user-4 05 TEST.png: [testng] [2024-11-29 09:58:13,042] [pool-1-thread-12] Initializing /data/public/user-2/dataset-user-2/user-2 04 TEST.png: [testng] [2024-11-29 09:58:14,652] [pool-1-thread-1] Initializing /data/public/user-3/user-3 09 TEST.png: [testng] [2024-11-29 09:58:14,739] [pool-1-thread-9] Initializing /data/public/user-1/dataset-user-1/user-1 04 TEST.png: [testng] [2024-11-29 09:58:14,815] [pool-1-thread-4] Initializing /data/public/user-11/user-11 10 TEST.png: [testng] [2024-11-29 09:58:14,891] [pool-1-thread-10] Initializing /data/public/user-7/dataset-user-7/user-7 03 TEST.png: [testng] [2024-11-29 09:58:14,967] [pool-1-thread-6] Initializing /data/public/user-3/dataset-user-3/user-3 04 TEST.png: [testng] [2024-11-29 09:58:15,037] [pool-1-thread-2] Initializing /data/public/user-1/Pdataset-user-1/user-1 08 TEST.png: [testng] [2024-11-29 09:58:15,149] [pool-1-thread-5] Initializing /data/big-images/8kx8k.png: [testng] [2024-11-29 09:58:15,482] [pool-1-thread-7] Initializing 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/data/public/user-8/Pdataset-user-8/user-8 08 TEST.png: [testng] [2024-11-29 09:58:42,800] [pool-1-thread-5] Initializing /data/public/user-7/user-7 10 TEST.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7950, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 21 seconds Finished: SUCCESS