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Started by upstream project "BIOFORMATS-test-repo" build number 274 originally caused by: Started by upstream project "Trigger" build number 295 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1199914307226079321.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43165_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:43:43,468 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:43,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:43:43,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:43,471 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:43,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:43,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:43,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:43,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:43,472 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:43,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:43,473 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:43,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:43,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:43,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:43,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:43,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:43,669 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:43,669 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:43,669 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:43,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:43,670 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:43:43,670 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:43:43,670 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-30 00:43:43,679] [main] java.version = 11.0.16 [testng] 00:43:43,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:43,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-30_00-43-43.log] [testng] 00:43:43,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-30 00:43:43,727] [main] testng.directory = /data [testng] [2024-11-30 00:43:43,727] [main] testng.configDirectory = /config [testng] [2024-11-30 00:43:43,736] [main] testng.multiplier = 1.0 [testng] [2024-11-30 00:43:43,738] [main] testng.in-memory = false [testng] [2024-11-30 00:43:43,738] [main] testng.allow-missing = false [testng] [2024-11-30 00:43:43,738] [main] user.language = en [testng] [2024-11-30 00:43:43,738] [main] user.country = ${user.country} [testng] [2024-11-30 00:43:43,738] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-30 00:44:04,753] [main] ---------------------------------------- [testng] [2024-11-30 00:44:04,754] [main] Total files: 259 [testng] [2024-11-30 00:44:04,754] [main] Scan time: 21.015 s (81 ms/file) [testng] [2024-11-30 00:44:04,754] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-30 00:49:59,999] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 00:49:59,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:00,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:00,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-30_00-50-00.log] [testng] 00:50:00,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@807d4b - End of configuration. [testng] [2024-11-30 00:50:00,357] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:50:00,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:00,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:00,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-30_00-50-00.log] [testng] 00:50:00,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3273d357 - End of configuration. [testng] [2024-11-30 00:50:00,770] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 00:50:00,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:00,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:00,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-30_00-50-00.log] [testng] 00:50:00,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c12ac2e - End of configuration. [testng] [2024-11-30 00:50:01,210] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 00:50:01,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:01,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:01,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-30_00-50-01.log] [testng] 00:50:01,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4685b78d - End of configuration. [testng] [2024-11-30 00:50:02,567] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 00:50:02,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:02,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:02,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-30_00-50-02.log] [testng] 00:50:02,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@729c5b65 - End of configuration. [testng] [2024-11-30 00:50:02,614] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 00:50:02,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:02,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:02,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-30_00-50-02.log] [testng] 00:50:02,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f39ac0d - End of configuration. [testng] [2024-11-30 00:50:02,814] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 00:50:02,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:02,814 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:02,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-30_00-50-02.log] [testng] 00:50:02,815 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79dece37 - End of configuration. [testng] [2024-11-30 00:50:03,201] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 00:50:03,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:03,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-30_00-50-03.log] [testng] 00:50:03,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@271ca8e2 - End of configuration. [testng] [2024-11-30 00:50:03,764] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 00:50:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:03,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-30_00-50-03.log] [testng] 00:50:03,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a59648e - End of configuration. [testng] [2024-11-30 00:50:11,564] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 00:50:11,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:11,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:11,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-30_00-50-11.log] [testng] 00:50:11,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b56173a - End of configuration. [testng] [2024-11-30 00:50:11,827] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 00:50:11,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:11,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:11,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-30_00-50-11.log] [testng] 00:50:11,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef71add - End of configuration. [testng] [2024-11-30 00:50:12,037] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 00:50:12,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:12,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:12,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-30_00-50-12.log] [testng] 00:50:12,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39335f19 - End of configuration. [testng] [2024-11-30 00:50:14,606] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-30 00:50:15,047] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] [2024-11-30 00:50:16,147] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-30 00:50:20,030] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-30 00:50:20,405] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-30 00:50:20,573] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-30 00:50:20,965] [pool-1-thread-7] Initializing /data/glen/simulstack.oib: [testng] [2024-11-30 00:50:21,447] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-30 00:50:22,927] [pool-1-thread-6] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-30 00:50:23,884] [pool-1-thread-12] Initializing /data/david/Image0016.oif: [testng] [2024-11-30 00:50:24,648] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-30 00:50:27,868] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-30 00:50:29,160] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-30 00:50:29,741] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-30 00:50:30,262] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-30 00:50:30,742] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-30 00:50:31,641] [pool-1-thread-6] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-30 00:50:33,259] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-30 00:50:33,748] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-30 00:50:33,813] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-30 00:50:34,406] [pool-1-thread-1] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-30 00:50:40,897] [pool-1-thread-4] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-30 00:50:49,410] [pool-1-thread-10] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-30 00:50:50,532] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-30 00:50:52,746] [pool-1-thread-3] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-30 00:50:53,757] [pool-1-thread-7] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-30 00:50:55,084] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-30 00:50:57,908] [pool-1-thread-6] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-30 00:51:24,091] [pool-1-thread-3] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-30 00:51:31,343] [pool-1-thread-12] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-30 00:52:27,441] [pool-1-thread-10] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-30 00:52:29,175] [pool-1-thread-11] Initializing /data/allan/62909#1.oib: [testng] [2024-11-30 00:52:31,061] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-30 00:52:33,322] [pool-1-thread-11] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-30 00:52:44,364] [pool-1-thread-10] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-30 00:52:47,249] [pool-1-thread-10] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-30 00:53:57,436] [pool-1-thread-12] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-30 00:54:00,061] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-30 00:54:31,433] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-30 00:54:37,684] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2024-11-30 00:54:43,934] [pool-1-thread-12] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-30 00:55:15,598] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-30 00:55:21,700] [pool-1-thread-12] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-30 00:56:14,895] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-30 00:56:21,156] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-11-30 00:56:26,319] [pool-1-thread-12] Initializing /data/simon/never_worked.oib: [testng] [2024-11-30 00:56:31,679] [pool-1-thread-12] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-30 00:56:54,654] [pool-1-thread-12] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-30 00:57:00,233] [pool-1-thread-12] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-30 00:57:06,205] [pool-1-thread-12] Initializing /data/johannes/step1.bmp: [testng] [2024-11-30 00:57:08,781] [pool-1-thread-12] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-30 00:57:14,446] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-30 00:57:19,735] [pool-1-thread-12] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-30 00:57:43,191] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-30 00:57:48,907] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-30 01:00:24,069] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-11-30 01:03:34,579] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2024-11-30 01:03:39,773] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-30 01:03:44,777] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-30 01:03:45,166] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-30 01:03:48,047] [pool-1-thread-7] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-30 01:03:48,644] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-30 01:03:53,738] [pool-1-thread-2] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-30 01:04:17,500] [pool-1-thread-7] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-30 01:04:21,212] [pool-1-thread-7] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-30 01:04:25,083] [pool-1-thread-7] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-30 01:05:28,833] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-30 01:05:33,517] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-30 01:05:54,624] [pool-1-thread-3] Initializing /data/christian/20min.oif: [testng] [2024-11-30 01:06:03,680] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-11-30 01:06:14,874] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-30 01:06:21,560] [pool-1-thread-12] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-30 01:06:51,667] [pool-1-thread-12] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-30 01:06:53,405] [pool-1-thread-12] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-30 01:06:56,083] [pool-1-thread-12] Initializing /data/aryeh/1h.oib: [testng] [2024-11-30 01:07:02,173] [pool-1-thread-12] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-30 01:07:06,360] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-30 01:07:29,337] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-30 01:07:30,302] [pool-1-thread-9] Initializing /data/david/Image0016.oib: [testng] [2024-11-30 01:07:33,045] [pool-1-thread-9] Initializing /data/monica/Image0056.oif: [testng] [2024-11-30 01:07:35,914] [pool-1-thread-11] Initializing /data/glen/Image0002.oif: [testng] [2024-11-30 01:08:02,606] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-30 01:08:06,827] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-30 01:08:11,492] [pool-1-thread-9] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-30 01:08:33,857] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-30 01:08:38,555] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-30 01:08:44,240] [pool-1-thread-9] Initializing /data/johannes/step3.bmp: [testng] [2024-11-30 01:08:46,346] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-30 01:10:40,609] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-30 01:10:45,596] [pool-1-thread-8] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-30 01:10:48,039] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-30 01:10:51,858] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-30 01:10:54,250] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-30 01:10:56,011] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-30 01:11:03,181] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-30 01:11:24,755] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-30 01:11:31,118] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-30 01:12:15,168] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-30 01:12:19,521] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-30 01:12:23,171] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-30 01:12:27,876] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-30 01:12:32,066] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-30 01:15:04,162] [pool-1-thread-12] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-30 01:16:51,229] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-30 01:16:56,087] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-30 01:16:59,910] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-30 01:17:03,957] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-30 01:17:10,889] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-30 01:17:15,254] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-30 01:17:20,759] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-30 01:17:25,218] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-30 01:17:30,281] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-30 01:17:32,690] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-30 01:19:54,180] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-30 01:20:04,144] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-30 01:20:12,153] [pool-1-thread-4] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-30 01:21:05,255] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-30 01:21:12,882] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-30 01:21:22,064] [pool-1-thread-4] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-30 01:21:29,304] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-30 01:21:36,658] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-30 01:21:44,120] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-30 01:22:26,800] [pool-1-thread-2] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-30 01:22:50,511] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-30 01:22:58,573] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-30 01:23:25,165] [pool-1-thread-11] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-30 01:23:32,946] [pool-1-thread-11] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-30 01:23:41,927] [pool-1-thread-11] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-30 01:23:59,623] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-30 01:24:05,961] [pool-1-thread-2] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-30 01:24:07,874] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-30 01:24:14,934] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 02:34:54,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:34:54,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:54,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-30_02-34-54.log] [testng] 02:34:54,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dea0730 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 111 minutes 14 seconds Finished: SUCCESS