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Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12336060902966103481.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43299_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:21:29,417 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:29,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:21:29,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:29,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:29,419 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:29,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:29,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:29,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:29,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:29,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:29,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:29,421 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:29,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:29,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:29,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:29,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:29,608 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:29,609 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:29,609 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:29,609 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:29,609 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:21:29,610 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:21:29,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 00:21:29,618] [main] java.version = 17.0.2 [testng] 00:21:29,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:29,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:29,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-21-29.log] [testng] 00:21:29,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 00:21:29,664] [main] testng.directory = /data [testng] [2024-12-01 00:21:29,664] [main] testng.configDirectory = /config [testng] [2024-12-01 00:21:29,673] [main] testng.multiplier = 1.0 [testng] [2024-12-01 00:21:29,673] [main] testng.in-memory = false [testng] [2024-12-01 00:21:29,673] [main] testng.allow-missing = false [testng] [2024-12-01 00:21:29,674] [main] user.language = en [testng] [2024-12-01 00:21:29,674] [main] user.country = ${user.country} [testng] [2024-12-01 00:21:29,674] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 00:22:25,211] [main] ---------------------------------------- [testng] [2024-12-01 00:22:25,211] [main] Total files: 4426 [testng] [2024-12-01 00:22:25,212] [main] Scan time: 55.537 s (12 ms/file) [testng] [2024-12-01 00:22:25,212] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 00:33:13,599] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 00:33:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:33:13,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:13,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-33-13.log] [testng] 00:33:13,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@938f2a0 - End of configuration. [testng] [2024-12-01 00:33:14,217] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 00:33:14,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:33:14,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:14,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-33-14.log] [testng] 00:33:14,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7abba6c3 - End of configuration. [testng] [2024-12-01 00:33:14,651] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 00:33:14,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:33:14,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:14,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-33-14.log] [testng] 00:33:14,654 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21589d32 - End of configuration. [testng] [2024-12-01 00:33:15,146] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 00:33:15,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:33:15,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:15,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-33-15.log] [testng] 00:33:15,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7f8593 - End of configuration. [testng] [2024-12-01 00:33:15,651] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 00:33:15,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:33:15,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:15,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-33-15.log] [testng] 00:33:15,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@330dacbe - End of configuration. [testng] [2024-12-01 00:33:16,150] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 00:33:16,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:33:16,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:16,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-33-16.log] [testng] 00:33:16,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@713185f6 - End of configuration. [testng] [2024-12-01 00:33:16,774] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 00:33:16,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:33:16,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:16,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-33-16.log] [testng] 00:33:16,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f52a90 - End of configuration. [testng] [2024-12-01 00:33:17,159] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 00:33:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:33:17,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:17,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-33-17.log] [testng] 00:33:17,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f4ad4c0 - End of configuration. [testng] [2024-12-01 00:33:17,697] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 00:33:17,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:33:17,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:17,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-33-17.log] [testng] 00:33:17,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b7ed217 - End of configuration. [testng] [2024-12-01 00:33:18,629] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 00:33:18,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:33:18,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:18,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-33-18.log] [testng] 00:33:18,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c6defac - End of configuration. [testng] [2024-12-01 00:33:19,221] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 00:33:19,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:33:19,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:19,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-33-19.log] [testng] 00:33:19,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7544da69 - End of configuration. [testng] [2024-12-01 00:33:19,798] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 00:33:19,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:33:19,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:19,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-33-19.log] [testng] 00:33:19,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63385532 - End of configuration. [testng] [2024-12-01 00:33:26,208] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-12-01 00:33:26,763] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-12-01 00:33:27,105] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-12-01 00:33:27,782] [pool-1-thread-10] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-12-01 00:33:28,556] [pool-1-thread-6] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-12-01 00:33:32,884] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-12-01 00:33:33,741] [pool-1-thread-8] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-12-01 00:33:34,389] [pool-1-thread-3] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-12-01 00:33:34,874] [pool-1-thread-12] Initializing /data/martin/head.tif: [testng] [2024-12-01 00:33:35,566] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-12-01 00:33:36,026] [pool-1-thread-1] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-12-01 00:33:36,897] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-12-01 00:33:40,817] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-12-01 00:33:42,114] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-12-01 00:33:42,920] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-12-01 00:33:43,476] [pool-1-thread-12] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-12-01 00:33:45,860] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-12-01 00:33:46,496] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-12-01 00:33:47,052] [pool-1-thread-10] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-12-01 00:33:47,550] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-12-01 00:33:48,000] [pool-1-thread-11] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-12-01 00:33:48,669] [pool-1-thread-5] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-12-01 00:33:49,551] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-12-01 00:33:54,353] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-12-01 00:33:55,808] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-12-01 00:33:56,545] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-12-01 00:33:57,143] [pool-1-thread-4] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-12-01 00:33:57,554] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-12-01 00:33:57,840] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-12-01 00:33:58,114] [pool-1-thread-5] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-12-01 00:33:58,263] [pool-1-thread-11] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-12-01 00:33:58,595] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-12-01 00:33:58,869] [pool-1-thread-8] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-12-01 00:34:01,644] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-12-01 00:34:03,272] [pool-1-thread-5] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-12-01 00:34:03,749] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-12-01 00:34:04,272] [pool-1-thread-11] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-12-01 00:34:05,088] [pool-1-thread-10] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-12-01 00:34:05,922] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-12-01 00:34:06,947] [pool-1-thread-3] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-12-01 00:34:07,982] [pool-1-thread-1] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-12-01 00:34:08,850] [pool-1-thread-4] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-12-01 00:34:09,517] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-12-01 00:34:10,122] [pool-1-thread-8] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-12-01 00:34:16,249] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-12-01 00:34:17,835] [pool-1-thread-11] Initializing 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[testng] [2024-12-01 00:40:23,809] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-12-01 00:40:24,694] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z013.tif: [testng] [2024-12-01 00:40:25,500] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-12-01 00:40:26,255] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-12-01 00:40:26,640] [pool-1-thread-1] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-12-01 00:40:30,615] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0204.TIF: [testng] [2024-12-01 00:40:30,998] [pool-1-thread-6] Initializing /data/public/libtiff/oxford.tif: [testng] [2024-12-01 00:40:31,351] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-12-01 00:40:31,654] [pool-1-thread-9] Initializing /data/misc/wtembryo.tiff: [testng] [2024-12-01 00:40:31,920] [pool-1-thread-10] Initializing 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00:41:37,101] [pool-1-thread-1] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina.tif: [testng] [2024-12-01 00:41:37,936] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0217.TIF: [testng] [2024-12-01 00:41:38,232] [pool-1-thread-12] Initializing /data/ascb/FND-11_PorterPaladeEarly_4800.tif: [testng] [2024-12-01 00:41:38,657] [pool-1-thread-6] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-12-01 00:41:40,161] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z032.tif: [testng] [2024-12-01 00:41:40,434] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z020.tif: [testng] [2024-12-01 00:41:40,638] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-32.tiff: [testng] [2024-12-01 00:41:40,824] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0219.TIF: [testng] [2024-12-01 00:41:40,992] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-12-01 00:41:41,145] 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00:43:22,990] [pool-1-thread-7] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-12-01 00:43:23,194] [pool-1-thread-10] Initializing /data/julien/Chadisoukkarieh6.TIF: [testng] [2024-12-01 00:43:23,446] [pool-1-thread-3] Initializing /data/damian/18m.tiff: [testng] [2024-12-01 00:43:25,120] [pool-1-thread-2] Initializing /data/damian/30m.tiff: [testng] [2024-12-01 00:43:25,310] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z029.tif: [testng] [2024-12-01 00:43:25,472] [pool-1-thread-5] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-12-01 00:43:25,628] [pool-1-thread-12] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-12-01 00:43:25,767] [pool-1-thread-1] Initializing /data/darwinjob/SESSION4_Image2.tif: [testng] [2024-12-01 00:43:25,910] [pool-1-thread-11] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2024-12-01 00:43:26,327] [pool-1-thread-7] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] [2024-12-01 00:43:27,464] [pool-1-thread-9] Initializing /data/public/cellprofiler/fruit-fly-cells/POS076.pattern/POS076.pattern: [testng] [2024-12-01 00:43:28,265] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-12-01 00:43:28,569] [pool-1-thread-10] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-12-01 00:43:29,807] [pool-1-thread-4] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-12-01 00:43:30,102] [pool-1-thread-5] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2024-12-01 00:43:30,482] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-12-01 00:43:30,704] [pool-1-thread-12] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-12-01 00:43:30,942] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-12-01 00:43:31,151] [pool-1-thread-11] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-12-01 00:43:31,540] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: [testng] [2024-12-01 00:43:31,705] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-12-01 00:43:34,113] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-12-01 00:43:34,438] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z020.tif: [testng] [2024-12-01 00:43:34,823] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [2024-12-01 00:43:35,175] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-12-01 00:43:35,464] [pool-1-thread-3] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-12-01 00:43:35,682] [pool-1-thread-7] Initializing /data/unknown/epsImgColony.tif: [testng] [2024-12-01 00:43:35,952] [pool-1-thread-8] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-12-01 00:43:36,113] [pool-1-thread-10] Initializing /data/public/libtiff/jim___ah.tif: [testng] [2024-12-01 00:43:36,445] [pool-1-thread-11] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-12-01 00:43:38,690] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z001.tif: [testng] [2024-12-01 00:43:39,257] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-12-01 00:43:39,557] [pool-1-thread-10] Initializing /data/misc/mri-old.mov: [testng] [2024-12-01 00:43:39,683] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2024-12-01 00:43:39,935] [pool-1-thread-12] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-12-01 00:43:40,319] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2024-12-01 00:43:40,491] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] [2024-12-01 00:43:40,670] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0216.TIF: [testng] [2024-12-01 00:43:40,901] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-12-01 00:43:41,067] [pool-1-thread-9] Initializing /data/josiah/cell-Z32.C1.tiff: [testng] [2024-12-01 00:43:42,397] [pool-1-thread-10] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-12-01 00:43:44,024] [pool-1-thread-5] Initializing /data/tobias/test002_1.tif: [testng] [2024-12-01 00:43:45,190] [pool-1-thread-2] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-12-01 00:43:45,870] [pool-1-thread-11] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-12-01 00:43:46,112] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs016.TIF: [testng] [2024-12-01 00:43:46,336] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] [2024-12-01 00:43:46,534] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z032.tif: [testng] [2024-12-01 00:43:46,710] [pool-1-thread-7] Initializing 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/data/josiah/cell-Z16.C1.tiff: [testng] [2024-12-01 00:43:52,351] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-12-01 00:43:52,526] [pool-1-thread-9] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-12-01 00:43:52,693] [pool-1-thread-8] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-12-01 00:43:52,975] [pool-1-thread-4] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-12-01 00:43:54,893] [pool-1-thread-10] Initializing /data/curtis/map/the-quick: [testng] [2024-12-01 00:43:56,186] [pool-1-thread-2] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-12-01 00:43:56,497] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-12-01 00:43:57,073] [pool-1-thread-12] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-12-01 00:43:57,587] [pool-1-thread-9] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-12-01 00:43:57,994] [pool-1-thread-11] Initializing /data/damian/12m.tiff: [testng] [2024-12-01 00:43:58,276] [pool-1-thread-3] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-12-01 00:43:58,453] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-12-01 00:43:59,042] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-12-01 00:43:59,719] [pool-1-thread-1] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-12-01 00:44:01,898] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-12-01 00:44:03,673] [pool-1-thread-5] Initializing /data/brian/Alx-488-pk.tif: [testng] [2024-12-01 00:44:04,181] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-12-01 00:44:04,592] [pool-1-thread-8] Initializing /data/edward/TestDoc2.tif: [testng] [2024-12-01 00:44:05,168] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-12-01 00:44:05,700] [pool-1-thread-3] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-12-01 00:44:06,023] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-12-01 00:44:06,220] [pool-1-thread-7] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-12-01 00:44:06,391] [pool-1-thread-4] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-12-01 00:44:08,136] [pool-1-thread-10] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-12-01 00:44:09,082] [pool-1-thread-2] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-12-01 00:44:09,510] [pool-1-thread-12] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-12-01 00:44:09,923] [pool-1-thread-5] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-12-01 00:44:10,825] [pool-1-thread-11] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-12-01 00:44:11,186] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-12-01 00:44:11,741] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-12-01 00:44:12,200] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-12-01 00:44:12,563] [pool-1-thread-4] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-12-01 00:44:12,906] [pool-1-thread-3] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-12-01 00:44:13,659] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-12-01 00:44:14,068] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-12-01 00:44:15,110] [pool-1-thread-5] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-12-01 00:44:15,686] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-12-01 00:44:16,130] [pool-1-thread-11] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-12-01 00:44:18,935] [pool-1-thread-1] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-12-01 00:44:19,291] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-12-01 00:44:19,596] [pool-1-thread-4] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-12-01 00:44:19,934] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-12-01 00:44:20,301] [pool-1-thread-7] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-12-01 00:44:21,225] [pool-1-thread-10] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-12-01 00:44:21,489] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-12-01 00:44:22,413] [pool-1-thread-5] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-12-01 00:44:23,816] [pool-1-thread-4] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-12-01 00:44:24,289] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-12-01 00:44:24,899] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-12-01 00:44:25,837] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-12-01 00:44:26,016] [pool-1-thread-1] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 minutes 33 seconds Finished: SUCCESS