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Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins12624065577438352583.sh + '[' lim = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43302_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:23:01,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:01,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:23:01,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:01,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:01,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:01,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:01,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:01,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:01,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:01,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:01,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:01,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:01,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:01,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:01,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:01,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:01,506 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:01,507 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:01,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:01,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:01,507 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:23:01,508 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:23:01,508 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 00:23:01,519] [main] java.version = 17.0.2 [testng] 00:23:01,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:01,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:01,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-23-01.log] [testng] 00:23:01,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 00:23:01,577] [main] testng.directory = /data [testng] [2024-12-01 00:23:01,578] [main] testng.configDirectory = /config [testng] [2024-12-01 00:23:01,589] [main] testng.multiplier = 1.0 [testng] [2024-12-01 00:23:01,590] [main] testng.in-memory = false [testng] [2024-12-01 00:23:01,590] [main] testng.allow-missing = false [testng] [2024-12-01 00:23:01,590] [main] user.language = en [testng] [2024-12-01 00:23:01,590] [main] user.country = ${user.country} [testng] [2024-12-01 00:23:01,590] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 00:23:02,455] [main] ---------------------------------------- [testng] [2024-12-01 00:23:02,456] [main] Total files: 21 [testng] [2024-12-01 00:23:02,456] [main] Scan time: 0.864 s (41 ms/file) [testng] [2024-12-01 00:23:02,456] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 00:23:07,575] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:23:07,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:23:07,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:07,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-23-07.log] [testng] 00:23:07,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1db78e1e - End of configuration. [testng] [2024-12-01 00:23:07,834] [pool-1-thread-12] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:23:07,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:23:07,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:07,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-23-07.log] [testng] 00:23:07,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ec96d7c - End of configuration. [testng] [2024-12-01 00:23:08,078] [pool-1-thread-11] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:23:08,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:23:08,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:08,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-23-08.log] [testng] 00:23:08,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48af7181 - End of configuration. [testng] [2024-12-01 00:23:08,299] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:23:08,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:23:08,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:08,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-23-08.log] [testng] 00:23:08,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@307674fd - End of configuration. [testng] [2024-12-01 00:23:08,516] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:23:08,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:23:08,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:08,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-23-08.log] [testng] 00:23:08,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e0d101 - End of configuration. [testng] [2024-12-01 00:23:08,849] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:23:08,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:23:08,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:08,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-23-08.log] [testng] 00:23:08,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4acf25db - End of configuration. [testng] [2024-12-01 00:23:09,193] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:23:09,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:23:09,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:09,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-23-09.log] [testng] 00:23:09,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d51cb2e - End of configuration. [testng] [2024-12-01 00:23:09,539] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:23:09,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:23:09,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:09,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-23-09.log] [testng] 00:23:09,541 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afa9ab1 - End of configuration. [testng] [2024-12-01 00:23:09,902] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:23:09,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:23:09,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:09,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-23-09.log] [testng] 00:23:09,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386870bb - End of configuration. [testng] [2024-12-01 00:23:10,213] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:23:10,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:23:10,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:10,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-23-10.log] [testng] 00:23:10,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9ec837 - End of configuration. [testng] [2024-12-01 00:23:10,564] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:23:10,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:23:10,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:10,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-23-10.log] [testng] 00:23:10,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d56e6bd - End of configuration. [testng] [2024-12-01 00:23:10,904] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:23:10,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:23:10,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:10,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-23-10.log] [testng] 00:23:10,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df9fdb - End of configuration. [testng] [2024-12-01 00:23:16,474] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-12-01 00:23:16,794] [pool-1-thread-12] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-01 00:23:17,162] [pool-1-thread-6] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-12-01 00:23:17,503] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-12-01 00:23:17,835] [pool-1-thread-4] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-12-01 00:23:18,123] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-12-01 00:23:18,457] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-12-01 00:23:18,772] [pool-1-thread-1] Initializing /data/venu/Kontrolle0018.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS