![[Jenkins]](/jenkins/static/eed02e22/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins854327853521167039.sh + '[' targa = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43325_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:36:45,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:36:45,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:36:45,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:45,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:45,930 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:36:45,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:36:45,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:36:45,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:45,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:45,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:36:45,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:36:45,932 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:36:46,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:36:46,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:36:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:36:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:36:46,118 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:36:46,118 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:36:46,118 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:36:46,119 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:36:46,119 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:36:46,119 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:36:46,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 00:36:46,128] [main] java.version = 17.0.2 [testng] 00:36:46,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:36:46,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:46,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_00-36-46.log] [testng] 00:36:46,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 00:36:46,173] [main] testng.directory = /data [testng] [2024-12-01 00:36:46,173] [main] testng.configDirectory = /config [testng] [2024-12-01 00:36:46,181] [main] testng.multiplier = 1.0 [testng] [2024-12-01 00:36:46,182] [main] testng.in-memory = false [testng] [2024-12-01 00:36:46,182] [main] testng.allow-missing = false [testng] [2024-12-01 00:36:46,182] [main] user.language = en [testng] [2024-12-01 00:36:46,182] [main] user.country = ${user.country} [testng] [2024-12-01 00:36:46,182] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 00:36:47,072] [main] ---------------------------------------- [testng] [2024-12-01 00:36:47,072] [main] Total files: 21 [testng] [2024-12-01 00:36:47,072] [main] Scan time: 0.89 s (42 ms/file) [testng] [2024-12-01 00:36:47,072] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 00:36:52,685] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] 00:36:52,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:52,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:52,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_00-36-52.log] [testng] 00:36:52,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b12d7 - End of configuration. [testng] [2024-12-01 00:36:52,870] [pool-1-thread-12] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:36:52,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:52,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:52,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_00-36-52.log] [testng] 00:36:52,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9f482c0 - End of configuration. [testng] [2024-12-01 00:36:53,147] [pool-1-thread-11] Initializing /data/samples/CTC24.TGA: [testng] 00:36:53,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:53,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:53,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_00-36-53.log] [testng] 00:36:53,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46b5cbbc - End of configuration. [testng] [2024-12-01 00:36:53,476] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 00:36:53,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:53,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:53,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_00-36-53.log] [testng] 00:36:53,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18c55b25 - End of configuration. [testng] [2024-12-01 00:36:53,802] [pool-1-thread-9] Initializing /data/samples/UTC24.TGA: [testng] 00:36:53,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:53,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:53,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_00-36-53.log] [testng] 00:36:53,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22f74e8f - End of configuration. [testng] [2024-12-01 00:36:54,124] [pool-1-thread-8] Initializing /data/samples/XING_B32.TGA: [testng] 00:36:54,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:54,124 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:54,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_00-36-54.log] [testng] 00:36:54,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40cd0145 - End of configuration. [testng] [2024-12-01 00:36:54,459] [pool-1-thread-7] Initializing /data/samples/UTC32.TGA: [testng] 00:36:54,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:54,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:54,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_00-36-54.log] [testng] 00:36:54,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fe62061 - End of configuration. [testng] [2024-12-01 00:36:54,788] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] 00:36:54,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:54,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:54,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_00-36-54.log] [testng] 00:36:54,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4635a024 - End of configuration. [testng] [2024-12-01 00:36:55,092] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] 00:36:55,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:55,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:55,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_00-36-55.log] [testng] 00:36:55,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48e57c - End of configuration. [testng] [2024-12-01 00:36:55,471] [pool-1-thread-4] Initializing /data/samples/XING_T24.TGA: [testng] 00:36:55,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:55,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:55,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_00-36-55.log] [testng] 00:36:55,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8e6e1d - End of configuration. [testng] [2024-12-01 00:36:55,822] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:36:55,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:55,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:55,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_00-36-55.log] [testng] 00:36:55,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@685fc38c - End of configuration. [testng] [2024-12-01 00:36:56,103] [pool-1-thread-2] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:36:56,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:56,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:56,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_00-36-56.log] [testng] 00:36:56,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d551e9 - End of configuration. [testng] [2024-12-01 00:36:59,722] [pool-1-thread-3] Initializing /data/samples/CBW8.TGA: [testng] [2024-12-01 00:36:59,948] [pool-1-thread-2] Initializing /data/samples/CTC16.TGA: [testng] [2024-12-01 00:37:00,160] [pool-1-thread-7] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-12-01 00:37:00,463] [pool-1-thread-12] Initializing /data/samples/FLAG_B16.TGA: [testng] [2024-12-01 00:37:00,792] [pool-1-thread-9] Initializing /data/samples/UTC16.TGA: [testng] [2024-12-01 00:37:01,131] [pool-1-thread-11] Initializing /data/samples/XING_B24.TGA: [testng] [2024-12-01 00:37:01,477] [pool-1-thread-8] Initializing /data/samples/MARBLES.TGA: [testng] [2024-12-01 00:37:01,824] [pool-1-thread-4] Initializing /data/samples/XING_T32.TGA: [testng] [2024-12-01 00:37:02,160] [pool-1-thread-10] Initializing /data/samples/XING_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 seconds Finished: SUCCESS