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Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins18228389312348959537.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43376_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:43:00,438 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:43:00,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:43:00,439 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:00,440 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:00,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:43:00,441 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:43:00,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:43:00,441 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:00,442 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:00,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:43:00,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:43:00,443 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:43:00,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:43:00,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:43:00,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:43:00,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:43:00,646 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:43:00,646 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:43:00,646 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:43:00,646 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:43:00,646 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:43:00,647 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:43:00,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 01:43:00,657] [main] java.version = 17.0.2 [testng] 01:43:00,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:43:00,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:00,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_01-43-00.log] [testng] 01:43:00,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 01:43:00,708] [main] testng.directory = /data [testng] [2024-12-01 01:43:00,709] [main] testng.configDirectory = /config [testng] [2024-12-01 01:43:00,719] [main] testng.multiplier = 1.0 [testng] [2024-12-01 01:43:00,719] [main] testng.in-memory = false [testng] [2024-12-01 01:43:00,720] [main] testng.allow-missing = false [testng] [2024-12-01 01:43:00,720] [main] user.language = en [testng] [2024-12-01 01:43:00,720] [main] user.country = ${user.country} [testng] [2024-12-01 01:43:00,720] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 01:46:07,486] [main] ---------------------------------------- [testng] [2024-12-01 01:46:07,486] [main] Total files: 268 [testng] [2024-12-01 01:46:07,486] [main] Scan time: 186.766 s (696 ms/file) [testng] [2024-12-01 01:46:07,486] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 01:49:34,977] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 01:49:34,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:49:34,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:34,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_01-49-34.log] [testng] 01:49:34,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f277dbe - End of configuration. [testng] [2024-12-01 01:49:35,506] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 01:49:35,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:49:35,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:35,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_01-49-35.log] [testng] 01:49:35,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e714f19 - End of configuration. [testng] [2024-12-01 01:49:35,827] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 01:49:35,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:49:35,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:35,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_01-49-35.log] [testng] 01:49:35,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15034553 - End of configuration. [testng] [2024-12-01 01:49:36,131] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 01:49:36,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:49:36,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:36,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_01-49-36.log] [testng] 01:49:36,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@557ca3bb - End of configuration. [testng] [2024-12-01 01:49:36,403] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:49:36,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:49:36,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:36,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_01-49-36.log] [testng] 01:49:36,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa0bf72 - End of configuration. [testng] [2024-12-01 01:49:36,692] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 01:49:36,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:49:36,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:36,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_01-49-36.log] [testng] 01:49:36,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13946fdd - End of configuration. [testng] [2024-12-01 01:49:36,945] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 01:49:36,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:49:36,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:36,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_01-49-36.log] [testng] 01:49:36,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e2a03c4 - End of configuration. [testng] [2024-12-01 01:49:38,005] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 01:49:38,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:49:38,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:38,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_01-49-38.log] [testng] 01:49:38,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17f27155 - End of configuration. [testng] [2024-12-01 01:49:38,338] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 01:49:38,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:49:38,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:38,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_01-49-38.log] [testng] 01:49:38,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146ed280 - End of configuration. [testng] [2024-12-01 01:49:38,702] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 01:49:38,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:49:38,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:38,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_01-49-38.log] [testng] 01:49:38,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71797482 - End of configuration. [testng] [2024-12-01 01:49:38,835] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 01:49:38,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:49:38,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:38,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_01-49-38.log] [testng] 01:49:38,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573616e0 - End of configuration. [testng] [2024-12-01 01:49:40,324] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 01:49:40,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:49:40,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:49:40,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_01-49-40.log] [testng] 01:49:40,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704c3f72 - End of configuration. [testng] [2024-12-01 01:49:44,631] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-12-01 01:49:46,943] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-01 01:49:47,497] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-01 01:49:49,170] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-01 01:49:50,749] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-01 01:49:51,120] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-12-01 01:49:52,602] [pool-1-thread-6] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-01 01:49:53,121] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-01 01:49:56,503] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-01 01:49:57,356] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-01 01:49:57,913] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-01 01:49:58,993] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-01 01:49:59,233] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-12-01 01:49:59,673] [pool-1-thread-9] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-01 01:50:01,248] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-01 01:50:01,813] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-01 01:50:02,599] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-01 01:50:06,342] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-01 01:50:07,203] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-01 01:50:09,119] [pool-1-thread-8] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-01 01:50:09,481] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-01 01:50:10,385] [pool-1-thread-3] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-01 01:50:11,975] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-01 01:50:12,117] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-01 01:50:13,526] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-01 01:50:15,744] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-01 01:50:16,455] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-01 01:50:17,430] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-01 01:50:18,972] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-01 01:50:19,562] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-01 01:50:20,093] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-01 01:50:20,522] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-01 01:50:21,029] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-01 01:50:22,805] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-01 01:50:25,330] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-01 01:50:27,230] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-01 01:50:28,679] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-01 01:50:29,025] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-01 01:50:29,599] [pool-1-thread-4] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-01 01:50:31,461] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-01 01:50:33,217] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-01 01:50:34,004] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-01 01:50:35,640] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-01 01:50:35,862] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-01 01:50:37,738] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-01 01:50:38,181] [pool-1-thread-5] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-01 01:50:38,409] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-01 01:50:40,175] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-01 01:50:42,655] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-01 01:50:44,298] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-01 01:50:46,097] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-12-01 01:50:47,613] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-01 01:50:48,244] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-01 01:50:49,801] [pool-1-thread-1] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-01 01:50:51,389] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-01 01:50:51,835] [pool-1-thread-4] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-01 01:50:56,501] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-01 01:50:56,954] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-12-01 01:50:57,466] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-01 01:50:58,045] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-01 01:50:58,514] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-01 01:51:00,110] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-01 01:51:01,072] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-01 01:51:01,301] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-01 01:51:02,274] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-01 01:51:02,847] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-01 01:51:04,521] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-01 01:51:05,628] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-01 01:51:06,204] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-01 01:51:07,793] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-01 01:51:08,331] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-01 01:51:09,034] [pool-1-thread-1] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-01 01:51:10,251] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-01 01:51:12,066] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-01 01:51:12,904] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-01 01:51:14,983] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-01 01:51:16,988] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-12-01 01:51:17,900] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-01 01:51:19,804] [pool-1-thread-6] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-01 01:51:20,764] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-01 01:51:21,176] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-01 01:51:21,532] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-01 01:51:22,097] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-01 01:51:22,622] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-01 01:51:25,510] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-01 01:51:25,976] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-01 01:51:26,278] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-01 01:51:26,782] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-01 01:51:28,477] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-01 01:51:29,389] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-01 01:51:32,564] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-01 01:51:33,661] [pool-1-thread-8] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-01 01:51:33,888] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-01 01:51:34,759] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-01 01:51:35,344] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-01 01:51:36,045] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-01 01:51:37,474] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-01 01:51:38,206] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-01 01:51:39,302] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-01 01:51:40,117] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-01 01:51:40,616] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-01 01:51:42,359] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-01 01:51:42,959] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-01 01:51:43,492] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-01 01:51:46,171] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-01 01:51:46,555] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-01 01:51:48,509] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-12-01 01:51:50,546] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-01 01:51:51,089] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-01 01:51:51,971] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-01 01:51:53,124] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-01 01:51:54,553] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-01 01:51:55,626] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-12-01 01:51:57,803] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-01 01:51:58,243] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-01 01:51:59,175] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-12-01 01:52:00,005] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-01 01:52:02,776] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-01 01:52:03,379] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-01 01:52:04,266] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-01 01:52:04,920] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-01 01:52:05,253] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-01 01:52:06,383] [pool-1-thread-4] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-01 01:52:08,515] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-01 01:52:10,528] [pool-1-thread-1] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-01 01:52:12,446] [pool-1-thread-9] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-01 01:52:14,428] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-01 01:52:15,783] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-01 01:52:17,604] [pool-1-thread-5] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-01 01:52:19,860] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-01 01:52:20,375] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-01 01:52:21,082] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-01 01:52:21,744] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-12-01 01:52:22,432] [pool-1-thread-3] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-01 01:52:24,825] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-01 01:52:25,286] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-01 01:52:25,897] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-12-01 01:52:26,809] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-01 01:52:27,402] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-01 01:52:28,050] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-01 01:52:28,622] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-12-01 01:52:29,173] [pool-1-thread-6] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-01 01:52:30,529] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-01 01:52:32,081] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-01 01:52:32,859] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-01 01:52:33,434] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-12-01 01:52:34,442] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-01 01:52:35,008] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 47 seconds Finished: SUCCESS