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Started by upstream project "BIOFORMATS-test-repo" build number 275 originally caused by: Started by upstream project "Trigger" build number 296 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins11424202503606779324.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43442_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:57:39,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:57:39,523 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:57:39,523 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:57:39,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:57:39,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:57:39,524 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:57:39,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:57:39,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:57:39,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:57:39,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:57:39,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:57:39,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:57:39,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:57:39,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:57:39,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:57:39,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:57:39,720 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:57:39,720 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:57:39,720 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:57:39,721 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:57:39,721 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:57:39,721 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:57:39,721 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-01 03:57:39,730] [main] java.version = 17.0.2 [testng] 03:57:39,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:57:39,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:39,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-01_03-57-39.log] [testng] 03:57:39,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-01 03:57:39,778] [main] testng.directory = /data [testng] [2024-12-01 03:57:39,778] [main] testng.configDirectory = /config [testng] [2024-12-01 03:57:39,787] [main] testng.multiplier = 1.0 [testng] [2024-12-01 03:57:39,788] [main] testng.in-memory = false [testng] [2024-12-01 03:57:39,788] [main] testng.allow-missing = false [testng] [2024-12-01 03:57:39,788] [main] user.language = en [testng] [2024-12-01 03:57:39,788] [main] user.country = ${user.country} [testng] [2024-12-01 03:57:39,788] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-01 03:57:42,960] [main] ---------------------------------------- [testng] [2024-12-01 03:57:42,960] [main] Total files: 17 [testng] [2024-12-01 03:57:42,961] [main] Scan time: 3.172 s (186 ms/file) [testng] [2024-12-01 03:57:42,961] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-01 03:57:45,850] [pool-1-thread-1] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 03:57:45,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:57:45,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:45,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-01_03-57-45.log] [testng] 03:57:45,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ef490e0 - End of configuration. [testng] [2024-12-01 03:57:46,022] [pool-1-thread-12] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 03:57:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:57:46,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-01_03-57-46.log] [testng] 03:57:46,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@425ef382 - End of configuration. [testng] [2024-12-01 03:57:46,209] [pool-1-thread-11] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 03:57:46,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:57:46,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-01_03-57-46.log] [testng] 03:57:46,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57207e3a - End of configuration. [testng] [2024-12-01 03:57:46,382] [pool-1-thread-10] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 03:57:46,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:57:46,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-01_03-57-46.log] [testng] 03:57:46,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26190eac - End of configuration. [testng] [2024-12-01 03:57:46,527] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: [testng] 03:57:46,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:57:46,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-01_03-57-46.log] [testng] 03:57:46,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52712091 - End of configuration. [testng] [2024-12-01 03:57:46,695] [pool-1-thread-8] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 03:57:46,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:57:46,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-01_03-57-46.log] [testng] 03:57:46,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dffaa71 - End of configuration. [testng] [2024-12-01 03:57:46,837] [pool-1-thread-7] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 03:57:46,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:57:46,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-01_03-57-46.log] [testng] 03:57:46,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51678a7 - End of configuration. [testng] [2024-12-01 03:57:46,963] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 03:57:46,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:57:46,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:46,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-01_03-57-46.log] [testng] 03:57:46,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@778fe85d - End of configuration. [testng] [2024-12-01 03:57:47,096] [pool-1-thread-5] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 03:57:47,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:57:47,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:47,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-01_03-57-47.log] [testng] 03:57:47,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@322e28f9 - End of configuration. [testng] [2024-12-01 03:57:47,245] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 03:57:47,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:57:47,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:47,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-01_03-57-47.log] [testng] 03:57:47,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e6a99be - End of configuration. [testng] [2024-12-01 03:57:47,375] [pool-1-thread-3] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 03:57:47,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:57:47,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:47,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-01_03-57-47.log] [testng] 03:57:47,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b058591 - End of configuration. [testng] [2024-12-01 03:57:47,493] [pool-1-thread-2] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 03:57:47,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:57:47,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:57:47,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-01_03-57-47.log] [testng] 03:57:47,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@93c487d - End of configuration. [testng] [2024-12-01 03:57:50,425] [pool-1-thread-1] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] [2024-12-01 03:57:50,556] [pool-1-thread-6] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-12-01 03:57:50,744] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [2024-12-01 03:57:50,885] [pool-1-thread-11] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-12-01 03:57:51,016] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS