![[Jenkins]](/jenkins/static/eed02e22/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 276 originally caused by: Started by upstream project "Trigger" build number 297 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10688235897063386833.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_43585_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:11:52,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:11:52,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:11:52,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:11:52,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:11:52,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:11:52,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:11:52,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:11:52,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:11:52,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:11:52,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:11:52,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:11:52,721 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:11:52,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:11:52,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:11:52,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:11:52,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:11:52,991 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:11:52,991 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:11:52,991 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:11:52,991 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:11:52,991 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:11:52,992 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:11:52,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-02 03:11:53,002] [main] java.version = 1.8.0_342 [testng] 03:11:53,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:11:53,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:11:53,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-02_03-11-53.log] [testng] 03:11:53,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-02 03:11:53,054] [main] testng.directory = /data [testng] [2024-12-02 03:11:53,055] [main] testng.configDirectory = /config [testng] [2024-12-02 03:11:53,067] [main] testng.multiplier = 1.0 [testng] [2024-12-02 03:11:53,067] [main] testng.in-memory = false [testng] [2024-12-02 03:11:53,068] [main] testng.allow-missing = false [testng] [2024-12-02 03:11:53,068] [main] user.language = fr [testng] [2024-12-02 03:11:53,068] [main] user.country = FR [testng] [2024-12-02 03:11:53,068] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-02 03:11:55,593] [main] ---------------------------------------- [testng] [2024-12-02 03:11:55,593] [main] Total files: 32 [testng] [2024-12-02 03:11:55,593] [main] Scan time: 2.525 s (78 ms/file) [testng] [2024-12-02 03:11:55,594] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-02 03:12:08,826] [pool-1-thread-1] Initializing /data/samples/Criterion.1sc: [testng] 03:12:08,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:12:08,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:08,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-02_03-12-08.log] [testng] 03:12:08,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3449bb4d - End of configuration. [testng] [2024-12-02 03:12:09,087] [pool-1-thread-12] Initializing /data/keith/test.1sc: [testng] 03:12:09,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:12:09,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:09,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-02_03-12-09.log] [testng] 03:12:09,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dbf523 - End of configuration. [testng] [2024-12-02 03:12:09,349] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 03:12:09,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:12:09,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:09,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-02_03-12-09.log] [testng] 03:12:09,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eaf3daa - End of configuration. [testng] [2024-12-02 03:12:10,176] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: [testng] 03:12:10,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:12:10,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:10,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-02_03-12-10.log] [testng] 03:12:10,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f2846f - End of configuration. [testng] [2024-12-02 03:12:10,290] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] 03:12:10,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:12:10,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:10,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-02_03-12-10.log] [testng] 03:12:10,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71df51c9 - End of configuration. [testng] [2024-12-02 03:12:10,524] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 03:12:10,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:12:10,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:10,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-02_03-12-10.log] [testng] 03:12:10,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c500b2b - End of configuration. [testng] [2024-12-02 03:12:10,767] [pool-1-thread-7] Initializing /data/keith/PF020328saur v3.1sc: [testng] 03:12:10,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:12:10,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:10,768 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-02_03-12-10.log] [testng] 03:12:10,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391c79c5 - End of configuration. [testng] [2024-12-02 03:12:11,006] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 03:12:11,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:12:11,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:11,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-02_03-12-11.log] [testng] 03:12:11,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ecc19c - End of configuration. [testng] [2024-12-02 03:12:11,265] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] 03:12:11,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:12:11,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:11,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-02_03-12-11.log] [testng] 03:12:11,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@435fd268 - End of configuration. [testng] [2024-12-02 03:12:11,373] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 03:12:11,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:12:11,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:11,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-02_03-12-11.log] [testng] 03:12:11,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e31b0e3 - End of configuration. [testng] [2024-12-02 03:12:11,618] [pool-1-thread-3] Initializing /data/keith/test2.1sc: [testng] 03:12:11,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:12:11,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:11,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-02_03-12-11.log] [testng] 03:12:11,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8fc304 - End of configuration. [testng] [2024-12-02 03:12:11,833] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 03:12:11,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:12:11,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:12:11,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-02_03-12-11.log] [testng] 03:12:11,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69a92e9f - End of configuration. [testng] [2024-12-02 03:12:15,892] [pool-1-thread-7] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-12-02 03:12:16,138] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2024-12-02 03:12:16,360] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc: [testng] [2024-12-02 03:12:16,607] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-12-02 03:12:17,415] [pool-1-thread-12] Initializing /data/qa-29469/bad3.1sc: [testng] [2024-12-02 03:12:17,684] [pool-1-thread-10] Initializing /data/qa-29469/good.1sc: [testng] [2024-12-02 03:12:17,947] [pool-1-thread-8] Initializing /data/keith/pg020410saur3.1sc: [testng] [2024-12-02 03:12:18,195] [pool-1-thread-5] Initializing /data/adrian/test_img.1sc: [testng] [2024-12-02 03:12:18,435] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-12-02 03:12:19,274] [pool-1-thread-6] Initializing /data/geert/good example1.1sc: [testng] [2024-12-02 03:12:22,083] [pool-1-thread-8] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-12-02 03:12:22,436] [pool-1-thread-1] Initializing /data/qa-29459/bad.jpg: [testng] [2024-12-02 03:12:22,672] [pool-1-thread-7] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-12-02 03:12:23,694] [pool-1-thread-2] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-12-02 03:12:24,586] [pool-1-thread-11] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-12-02 03:12:25,191] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-12-02 03:12:26,232] [pool-1-thread-10] Initializing /data/geert/good example1.1sc.jpg: [testng] [2024-12-02 03:12:26,360] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-12-02 03:12:26,660] [pool-1-thread-9] Initializing /data/qa-29459/bad.1sc: [testng] [2024-12-02 03:12:26,943] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS