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Started by upstream project "BIOFORMATS-test-repo" build number 277 originally caused by: Started by upstream project "Trigger" build number 298 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6555555008898849409.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43631_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:23:49,449 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:49,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:23:49,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:49,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:49,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:49,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:49,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:49,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:49,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:49,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:49,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:49,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:49,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:49,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:49,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:49,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:49,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:49,662 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:49,662 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:49,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:49,663 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:23:49,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:23:49,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-03 00:23:49,674] [main] java.version = 11.0.16 [testng] 00:23:49,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:49,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:49,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_00-23-49.log] [testng] 00:23:49,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-03 00:23:49,728] [main] testng.directory = /data [testng] [2024-12-03 00:23:49,728] [main] testng.configDirectory = /config [testng] [2024-12-03 00:23:49,739] [main] testng.multiplier = 1.0 [testng] [2024-12-03 00:23:49,740] [main] testng.in-memory = false [testng] [2024-12-03 00:23:49,740] [main] testng.allow-missing = false [testng] [2024-12-03 00:23:49,740] [main] user.language = en [testng] [2024-12-03 00:23:49,741] [main] user.country = ${user.country} [testng] [2024-12-03 00:23:49,741] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-03 00:24:13,273] [main] ---------------------------------------- [testng] [2024-12-03 00:24:13,274] [main] Total files: 21 [testng] [2024-12-03 00:24:13,274] [main] Scan time: 23.532 s (1120 ms/file) [testng] [2024-12-03 00:24:13,274] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-03 00:24:58,386] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 00:24:58,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:58,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:58,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_00-24-58.log] [testng] 00:24:58,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12f3a072 - End of configuration. [testng] [2024-12-03 00:24:59,791] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 00:24:59,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:59,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:59,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_00-24-59.log] [testng] 00:24:59,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e449ad3 - End of configuration. [testng] [2024-12-03 00:25:01,149] [pool-1-thread-11] Initializing /data/stefan/001_q06.txt: [testng] 00:25:01,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:25:01,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:01,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_00-25-01.log] [testng] 00:25:01,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61295f0 - End of configuration. [testng] [2024-12-03 00:25:02,274] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt: [testng] 00:25:02,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:25:02,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:02,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_00-25-02.log] [testng] 00:25:02,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ba844b0 - End of configuration. [testng] [2024-12-03 00:25:04,526] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt: [testng] 00:25:04,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:25:04,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:04,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_00-25-04.log] [testng] 00:25:04,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b9780e - End of configuration. [testng] [2024-12-03 00:25:05,601] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt: [testng] 00:25:05,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:25:05,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:05,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_00-25-05.log] [testng] 00:25:05,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fb41a7b - End of configuration. [testng] [2024-12-03 00:25:07,278] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 00:25:07,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:25:07,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:07,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_00-25-07.log] [testng] 00:25:07,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b115c37 - End of configuration. [testng] [2024-12-03 00:25:09,953] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt: [testng] 00:25:09,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:25:09,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:09,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_00-25-09.log] [testng] 00:25:09,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@184c6a8e - End of configuration. [testng] [2024-12-03 00:25:14,356] [pool-1-thread-5] Initializing /data/stefan/001_q03.txt: [testng] 00:25:14,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:25:14,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:14,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_00-25-14.log] [testng] 00:25:14,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672750d8 - End of configuration. [testng] [2024-12-03 00:25:16,977] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 00:25:16,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:25:16,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:16,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_00-25-16.log] [testng] 00:25:16,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ec0566b - End of configuration. [testng] [2024-12-03 00:25:21,172] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 00:25:21,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:25:21,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:21,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_00-25-21.log] [testng] 00:25:21,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@111771be - End of configuration. [testng] [2024-12-03 00:25:24,594] [pool-1-thread-2] Initializing /data/stefan/001_q09.txt: [testng] 00:25:24,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:25:24,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:25:24,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_00-25-24.log] [testng] 00:25:24,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399ade6b - End of configuration. [testng] [2024-12-03 00:25:47,934] [pool-1-thread-5] Initializing /data/stefan/001_q17.txt: [testng] [2024-12-03 00:25:49,488] [pool-1-thread-7] Initializing /data/stefan/001_q13.txt: [testng] [2024-12-03 00:25:51,489] [pool-1-thread-1] Initializing /data/stefan/001_q18.txt: [testng] [2024-12-03 00:25:52,666] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] [2024-12-03 00:25:53,984] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-12-03 00:25:56,068] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 31 seconds Finished: SUCCESS