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Started by upstream project "BIOFORMATS-test-repo" build number 277 originally caused by: Started by upstream project "Trigger" build number 298 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1545041361209105744.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43657_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:46:30,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:46:30,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:46:30,931 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:30,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:30,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:46:30,935 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:46:30,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:46:30,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:30,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:30,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:46:30,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:46:30,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:46:31,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:46:31,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:46:31,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:46:31,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:46:31,246 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:46:31,247 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:46:31,247 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:46:31,248 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:46:31,248 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:46:31,249 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:46:31,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 313 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-03 00:46:31,264] [main] java.version = 11.0.16 [testng] 00:46:31,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:46:31,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:31,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_00-46-31.log] [testng] 00:46:31,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-03 00:46:31,332] [main] testng.directory = /data [testng] [2024-12-03 00:46:31,332] [main] testng.configDirectory = /config [testng] [2024-12-03 00:46:31,348] [main] testng.multiplier = 1.0 [testng] [2024-12-03 00:46:31,351] [main] testng.in-memory = false [testng] [2024-12-03 00:46:31,351] [main] testng.allow-missing = false [testng] [2024-12-03 00:46:31,351] [main] user.language = en [testng] [2024-12-03 00:46:31,352] [main] user.country = ${user.country} [testng] [2024-12-03 00:46:31,352] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-03 00:46:55,905] [main] ---------------------------------------- [testng] [2024-12-03 00:46:55,905] [main] Total files: 259 [testng] [2024-12-03 00:46:55,905] [main] Scan time: 24.553 s (94 ms/file) [testng] [2024-12-03 00:46:55,905] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-03 00:53:08,618] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 00:53:08,618 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:53:08,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:08,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_00-53-08.log] [testng] 00:53:08,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c6c323 - End of configuration. [testng] [2024-12-03 00:53:08,886] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:53:08,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:53:08,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:08,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_00-53-08.log] [testng] 00:53:08,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@81dcaa7 - End of configuration. [testng] [2024-12-03 00:53:09,179] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 00:53:09,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:53:09,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_00-53-09.log] [testng] 00:53:09,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c065bba - End of configuration. [testng] [2024-12-03 00:53:09,652] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 00:53:09,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:53:09,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:09,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_00-53-09.log] [testng] 00:53:09,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f538477 - End of configuration. [testng] [2024-12-03 00:53:11,249] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 00:53:11,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:53:11,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_00-53-11.log] [testng] 00:53:11,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ee155c - End of configuration. [testng] [2024-12-03 00:53:11,284] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 00:53:11,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:53:11,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_00-53-11.log] [testng] 00:53:11,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bfba448 - End of configuration. [testng] [2024-12-03 00:53:11,448] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 00:53:11,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:53:11,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_00-53-11.log] [testng] 00:53:11,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20e82922 - End of configuration. [testng] [2024-12-03 00:53:11,910] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 00:53:11,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:53:11,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:11,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_00-53-11.log] [testng] 00:53:11,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b5764a - End of configuration. [testng] [2024-12-03 00:53:12,373] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 00:53:12,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:53:12,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:12,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_00-53-12.log] [testng] 00:53:12,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12252023 - End of configuration. [testng] [2024-12-03 00:53:19,200] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 00:53:19,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:53:19,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:19,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_00-53-19.log] [testng] 00:53:19,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44d7e126 - End of configuration. [testng] [2024-12-03 00:53:19,492] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 00:53:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:53:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:19,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_00-53-19.log] [testng] 00:53:19,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@703717d - End of configuration. [testng] [2024-12-03 00:53:19,764] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 00:53:19,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:53:19,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:53:19,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_00-53-19.log] [testng] 00:53:19,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d9eb00 - End of configuration. [testng] [2024-12-03 00:53:22,414] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-12-03 00:53:22,842] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] [2024-12-03 00:53:24,076] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-12-03 00:53:28,528] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-12-03 00:53:28,889] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-12-03 00:53:29,089] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-12-03 00:53:30,058] [pool-1-thread-7] Initializing /data/glen/simulstack.oib: [testng] [2024-12-03 00:53:30,432] [pool-1-thread-11] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-12-03 00:53:31,673] [pool-1-thread-6] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-12-03 00:53:32,893] [pool-1-thread-12] Initializing /data/david/Image0016.oif: [testng] [2024-12-03 00:53:33,876] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-12-03 00:53:36,788] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-12-03 00:53:38,933] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-12-03 00:53:40,408] [pool-1-thread-3] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-12-03 00:53:40,740] [pool-1-thread-6] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-12-03 00:53:41,742] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-12-03 00:53:42,096] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2024-12-03 00:53:43,971] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-12-03 00:53:44,641] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-12-03 00:53:45,596] [pool-1-thread-4] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-12-03 00:53:46,256] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-12-03 00:53:54,554] [pool-1-thread-10] Initializing /data/molly/11OCT9.OIF: [testng] [2024-12-03 00:54:06,762] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-12-03 00:54:07,816] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-12-03 00:54:08,300] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-12-03 00:54:09,839] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-12-03 00:54:15,375] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-12-03 00:54:18,381] [pool-1-thread-6] Initializing /data/molly/11OCT3.OIF: [testng] [2024-12-03 00:54:52,475] [pool-1-thread-1] Initializing /data/molly/11OCT7.OIF: [testng] [2024-12-03 00:55:01,497] [pool-1-thread-12] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-12-03 00:56:10,835] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-12-03 00:56:12,899] [pool-1-thread-3] Initializing /data/allan/62909#1.oib: [testng] [2024-12-03 00:56:13,269] [pool-1-thread-4] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-12-03 00:56:17,987] [pool-1-thread-3] Initializing /data/molly/11OCT5.OIF: [testng] [2024-12-03 00:56:28,867] [pool-1-thread-11] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-12-03 00:56:31,833] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-12-03 00:57:42,278] [pool-1-thread-12] Initializing /data/tom/RGB-1.avi: [testng] [2024-12-03 00:57:44,753] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif: [testng] [2024-12-03 00:58:22,981] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-12-03 00:58:29,485] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2024-12-03 00:58:36,659] [pool-1-thread-12] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-12-03 00:59:11,124] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-12-03 00:59:18,192] [pool-1-thread-12] Initializing /data/glen/singlesimul.oif: [testng] [2024-12-03 01:00:15,660] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-12-03 01:00:22,817] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-12-03 01:00:29,452] [pool-1-thread-12] Initializing /data/simon/never_worked.oib: [testng] [2024-12-03 01:00:35,978] [pool-1-thread-12] Initializing /data/aryeh/control_test.oib: [testng] [2024-12-03 01:01:05,010] [pool-1-thread-12] Initializing /data/brian/lambda02nm.oib: [testng] [2024-12-03 01:01:10,757] [pool-1-thread-12] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-12-03 01:01:16,555] [pool-1-thread-12] Initializing /data/johannes/step1.bmp: [testng] [2024-12-03 01:01:19,140] [pool-1-thread-12] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-12-03 01:01:25,468] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-12-03 01:01:30,448] [pool-1-thread-12] Initializing /data/yoshihito/XY.oif: [testng] [2024-12-03 01:01:54,641] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-12-03 01:02:02,898] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-12-03 01:04:56,065] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-12-03 01:07:59,024] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2024-12-03 01:08:04,443] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-12-03 01:08:11,022] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-12-03 01:08:15,370] [pool-1-thread-2] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-12-03 01:08:16,778] [pool-1-thread-4] Initializing /data/glen/Null file/test change.oif: [testng] [2024-12-03 01:08:18,980] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-12-03 01:08:26,426] [pool-1-thread-2] Initializing /data/molly/11OCT8.OIF: [testng] [2024-12-03 01:08:51,782] [pool-1-thread-4] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-12-03 01:08:55,998] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-12-03 01:09:00,174] [pool-1-thread-4] Initializing /data/molly/11OCT6.OIF: [testng] [2024-12-03 01:10:01,308] [pool-1-thread-12] Initializing /data/glen/singlesimul.oib: [testng] [2024-12-03 01:10:04,725] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-12-03 01:10:26,634] [pool-1-thread-1] Initializing /data/christian/20min.oif: [testng] [2024-12-03 01:10:44,388] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] [2024-12-03 01:10:48,495] [pool-1-thread-12] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-12-03 01:11:11,212] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-12-03 01:11:36,221] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-12-03 01:11:39,027] [pool-1-thread-1] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-12-03 01:11:41,709] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-12-03 01:11:50,928] [pool-1-thread-1] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-12-03 01:11:51,971] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-12-03 01:11:59,191] [pool-1-thread-1] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-12-03 01:12:00,079] [pool-1-thread-1] Initializing /data/david/Image0016.oib: [testng] [2024-12-03 01:12:03,671] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-12-03 01:12:04,396] [pool-1-thread-3] Initializing /data/glen/Image0002.oif: [testng] [2024-12-03 01:12:32,882] [pool-1-thread-1] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-12-03 01:12:37,850] [pool-1-thread-1] Initializing /data/yasunori/series_1.oib: [testng] [2024-12-03 01:12:42,132] [pool-1-thread-1] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-12-03 01:13:10,385] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-12-03 01:13:14,131] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-12-03 01:13:18,873] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-12-03 01:13:20,512] [pool-1-thread-1] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-12-03 01:14:28,987] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-12-03 01:14:34,123] [pool-1-thread-8] Initializing /data/kay/IM2pg.oib: [testng] [2024-12-03 01:14:39,787] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-12-03 01:14:41,013] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-12-03 01:14:45,769] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-12-03 01:14:47,595] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-12-03 01:14:59,378] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-12-03 01:15:59,660] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-12-03 01:16:06,514] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-12-03 01:16:26,475] [pool-1-thread-12] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-12-03 01:16:32,948] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-12-03 01:16:35,973] [pool-1-thread-12] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-12-03 01:16:43,153] [pool-1-thread-12] Initializing /data/pedro/plv-test.oib: [testng] [2024-12-03 01:16:48,085] [pool-1-thread-12] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-12-03 01:20:51,546] [pool-1-thread-9] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-12-03 01:22:29,335] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-12-03 01:22:37,166] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-12-03 01:22:42,869] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-12-03 01:22:49,095] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-12-03 01:23:00,392] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-12-03 01:23:08,125] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-12-03 01:23:17,697] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-12-03 01:23:23,979] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-12-03 01:23:32,133] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-12-03 01:23:35,214] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-12-03 01:28:27,160] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-12-03 01:28:39,170] [pool-1-thread-10] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-12-03 01:28:49,188] [pool-1-thread-10] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-12-03 01:29:53,389] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-12-03 01:30:03,035] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-12-03 01:30:14,093] [pool-1-thread-10] Initializing /data/glen/singleseqline.oib: [testng] [2024-12-03 01:30:20,763] [pool-1-thread-10] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-12-03 01:30:25,780] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-12-03 01:30:28,547] [pool-1-thread-10] Initializing /data/glen/singleseqline.oif: [testng] [2024-12-03 01:30:34,368] [pool-1-thread-2] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-12-03 01:31:18,988] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-12-03 01:31:29,181] [pool-1-thread-3] Initializing /data/molly/11OCT11.OIF: [testng] [2024-12-03 01:32:00,164] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-12-03 01:32:01,596] [pool-1-thread-2] Initializing /data/tom/zseries-test.oib: [testng] [2024-12-03 01:32:10,201] [pool-1-thread-10] Initializing /data/glen/notsaturated.oif: [testng] [2024-12-03 01:32:17,014] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-12-03 01:32:23,878] [pool-1-thread-2] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-12-03 01:32:25,946] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-12-03 01:32:34,388] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 02:00:19,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:00:19,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:19,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_02-00-19.log] [testng] 02:00:19,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566bc03a - End of configuration. [testng] 02:50:23,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:50:23,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:23,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_02-50-23.log] [testng] 02:50:23,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f116270 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 123 minutes 56 seconds Finished: SUCCESS