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Started by upstream project "BIOFORMATS-test-repo" build number 278 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins1553651314455870062.sh + '[' lim = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_43794_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 09:22:28,283 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:22:28,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 09:22:28,285 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:22:28,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:22:28,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:22:28,287 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:22:28,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:22:28,288 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:22:28,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:22:28,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:22:28,290 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:22:28,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:22:28,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:22:28,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:22:28,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:22:28,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:22:28,539 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:22:28,540 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:22:28,540 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:22:28,540 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:22:28,540 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 09:22:28,541 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 09:22:28,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-03 09:22:28,551] [main] java.version = 11.0.16 [testng] 09:22:28,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:22:28,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:28,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-03_09-22-28.log] [testng] 09:22:28,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-03 09:22:28,608] [main] testng.directory = /data [testng] [2024-12-03 09:22:28,608] [main] testng.configDirectory = /config [testng] [2024-12-03 09:22:28,619] [main] testng.multiplier = 1.0 [testng] [2024-12-03 09:22:28,620] [main] testng.in-memory = false [testng] [2024-12-03 09:22:28,620] [main] testng.allow-missing = false [testng] [2024-12-03 09:22:28,620] [main] user.language = en [testng] [2024-12-03 09:22:28,620] [main] user.country = ${user.country} [testng] [2024-12-03 09:22:28,620] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-03 09:22:29,280] [main] ---------------------------------------- [testng] [2024-12-03 09:22:29,280] [main] Total files: 21 [testng] [2024-12-03 09:22:29,281] [main] Scan time: 0.66 s (31 ms/file) [testng] [2024-12-03 09:22:29,281] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-03 09:22:35,183] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 09:22:35,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:22:35,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-03_09-22-35.log] [testng] 09:22:35,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70f72b83 - End of configuration. [testng] [2024-12-03 09:22:35,381] [pool-1-thread-12] Initializing /data/venu/Kontrolle0012.lim: [testng] 09:22:35,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:22:35,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-03_09-22-35.log] [testng] 09:22:35,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5caf94f6 - End of configuration. [testng] [2024-12-03 09:22:35,473] [pool-1-thread-11] Initializing /data/venu/Kontrolle0007.lim: [testng] 09:22:35,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:22:35,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-03_09-22-35.log] [testng] 09:22:35,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb587e3 - End of configuration. [testng] [2024-12-03 09:22:35,567] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 09:22:35,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:22:35,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-03_09-22-35.log] [testng] 09:22:35,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28da0bf8 - End of configuration. [testng] [2024-12-03 09:22:35,656] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] 09:22:35,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:22:35,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-03_09-22-35.log] [testng] 09:22:35,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@408b8b94 - End of configuration. [testng] [2024-12-03 09:22:35,733] [pool-1-thread-8] Initializing /data/venu/Kontrolle0020.lim: [testng] 09:22:35,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:22:35,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-03_09-22-35.log] [testng] 09:22:35,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33e32ac0 - End of configuration. [testng] [2024-12-03 09:22:35,857] [pool-1-thread-7] Initializing /data/venu/Kontrolle0013.lim: [testng] 09:22:35,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:22:35,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:35,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-03_09-22-35.log] [testng] 09:22:35,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62a54eee - End of configuration. [testng] [2024-12-03 09:22:36,173] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] 09:22:36,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:22:36,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:36,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-03_09-22-36.log] [testng] 09:22:36,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b840dd - End of configuration. [testng] [2024-12-03 09:22:36,492] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim: [testng] 09:22:36,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:22:36,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:36,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-03_09-22-36.log] [testng] 09:22:36,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@192f7cfe - End of configuration. [testng] [2024-12-03 09:22:36,576] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] 09:22:36,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:22:36,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:36,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-03_09-22-36.log] [testng] 09:22:36,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2ce26d - End of configuration. [testng] [2024-12-03 09:22:36,713] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 09:22:36,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:22:36,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:36,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-03_09-22-36.log] [testng] 09:22:36,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2487ef64 - End of configuration. [testng] [2024-12-03 09:22:36,849] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim: [testng] 09:22:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:22:36,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:22:36,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-03_09-22-36.log] [testng] 09:22:36,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2efe4e30 - End of configuration. [testng] [2024-12-03 09:22:41,469] [pool-1-thread-6] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-03 09:22:41,669] [pool-1-thread-4] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-03 09:22:41,893] [pool-1-thread-10] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-12-03 09:22:42,119] [pool-1-thread-11] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-12-03 09:22:42,394] [pool-1-thread-1] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-12-03 09:22:42,649] [pool-1-thread-2] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-12-03 09:22:42,830] [pool-1-thread-3] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-12-03 09:22:43,271] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS